GWAS1179437_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1179437_H (lymphocyte count QTL GWAS1179437 (human)) Homo sapiens

Symbol: GWAS1179437_H
Name: lymphocyte count QTL GWAS1179437 (human)
RGD ID: 597083363
Trait: lymphocyte count
Measurement Type: blood lymphocyte count   (CMO:0000031)    
LOD Score: Not Available
P Value: 9.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381548,266,445 - 48,266,446RGD_MAPPER_PIPELINEGRCh38
GRCh371548,558,642 - 48,558,643RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1179437_HHumanblood lymphocyte count  IAGPrs67628277405850206 GWAS_CATALOGPMID:32888494

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1179437_HHumanlymphocyte count  IAGPrs67628277405850206 GWAS_CATALOGPMID:32888494

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
731943SLC12A1solute carrier family 12 member 1154820630248304078Human


Peak: (rs67628277)
Human AssemblyChrPosition (strand)Source
GRCh381548,266,445 - 48,266,446RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597083363GWAS1179437_Hlymphocyte count QTL GWAS1179437 (human)9e-11lymphocyte countblood lymphocyte count (CMO:0000031)154826644548266446Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1179437_H GCST90002388 Lymphocyte count 408,112 British individuals CT 0.83034 9E-11 10.046 rs67628277 0.020884072 lymphocyte count (EFO:0004587)
 PMID:32888494
Database
Acc Id
Source(s)
GWAS Catalog GCST90002388 GWAS Catalog

Note Type Note Reference