GWAS1179162_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1179162_H (neutrophil count QTL GWAS1179162 (human)) Homo sapiens

Symbol: GWAS1179162_H
Name: neutrophil count QTL GWAS1179162 (human)
RGD ID: 597083088
Trait: neutrophil quantity   (VT:0000222)    
Measurement Type: blood neutrophil count   (CMO:0000030)    
LOD Score: Not Available
P Value: 3.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382137,416,344 - 37,416,345RGD_MAPPER_PIPELINEGRCh38
GRCh372138,788,646 - 38,788,647RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1179162_HHumanblood neutrophil count  IAGPrs11701269405850206 GWAS_CATALOGPMID:32888493

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1179162_HHumanneutrophil quantity  IAGPrs11701269405850206 GWAS_CATALOGPMID:32888493

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1179162_HHumanneutrophil count  IAGPrs11701269405850206 GWAS_CATALOGPMID:32888493

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
737237DYRK1Adual specificity tyrosine phosphorylation regulated kinase 1A213736557337526358Human


Peak: (rs11701269)
Human AssemblyChrPosition (strand)Source
GRCh382137,416,344 - 37,416,345RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597083088GWAS1179162_Hneutrophil count QTL GWAS1179162 (human)3e-13neutrophil quantity (VT:0000222)blood neutrophil count (CMO:0000030)213741634437416345Human
2303081MAMTS49_HMammary tumor susceptibility QTL 49 (human)1.72Mammary tumor susceptibility211795044843950448Human
597083292GWAS1179366_Hneutrophil count QTL GWAS1179366 (human)1e-14neutrophil quantity (VT:0000222)blood neutrophil count (CMO:0000030)213741634437416345Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1179162_H GCST90002355 Neutrophil count 627,215 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals C 0.106037 3E-13 12.523 rs11701269 N/A neutrophil count (EFO:0004833)
 PMID:32888493
GWAS1179366_H GCST90002351 Neutrophil count 519,288 European ancestry individuals C 0.110468 1E-14 14 rs11701269 0.024566 neutrophil count (EFO:0004833)
 PMID:32888493
Database
Acc Id
Source(s)
GWAS Catalog GCST90002355 GWAS Catalog

Note Type Note Reference