GWAS1168454_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1168454_H (neuroticism measurement QTL GWAS1168454 (human)) Homo sapiens

Symbol: GWAS1168454_H
Name: neuroticism measurement QTL GWAS1168454 (human)
RGD ID: 597072380
Trait: neuroticism measurement
LOD Score: Not Available
P Value: 2.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381546,024,286 - 46,024,287RGD_MAPPER_PIPELINEGRCh38
GRCh371546,316,484 - 46,316,485RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1168454_HHumanneuroticism measurement  IAGPrs12902680405850206 GWAS_CATALOGPMID:29500382

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs12902680)
Human AssemblyChrPosition (strand)Source
GRCh381546,024,286 - 46,024,287RGD_MAPPER_PIPELINE


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
597072380GWAS1168454_Hneuroticism measurement QTL GWAS1168454 (human)2e-08neuroticism measurement154602428646024287Human
597073532GWAS1169606_Hneuroticism measurement QTL GWAS1169606 (human)0.0000002neuroticism measurement154602428646024287Human
597340289GWAS1436363_Hneuroticism measurement, cognitive function measurement QTL GWAS1436363 (human)2e-11cognitive behavior trait (VT:0010450)154602428646024287Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597200951GWAS1297025_Hneuroticism measurement QTL GWAS1297025 (human)0.0000003neuroticism measurement154602428646024287Human

1 to 9 of 9 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1168454_H GCST006940 Neurociticism 380,506 European ancestry individuals T 0.381068 2E-8 7.699 rs12902680 5.63 neuroticism measurement (EFO:0007660)
 PMID:29500382
GWAS1169606_H GCST005232 Neuroticism 329,821 European ancestry individuals T 0.61893 2E-7 6.699 rs12902680 5.212 neuroticism measurement (EFO:0007660)
 PMID:29255261
GWAS1297025_H GCST90428866 Neuroticism general factor at least 380,000 individuals T NR 3E-7 6.523 rs12902680 0.004489467 neuroticism measurement (EFO:0007660)
 PMID:37783279
GWAS1436363_H GCST90270074 Personality traits or cognitive traits (multivariate analysis) 337,125 British ancestry individuals ? NR 2E-11 10.699 rs12902680 N/A neuroticism measurement (EFO:0007660)
cognitive function measurement (EFO:0008354)
 PMID:37365406
Database
Acc Id
Source(s)
GWAS Catalog GCST006940 GWAS Catalog

Note Type Note Reference