GWAS1162838_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1162838_H (susceptibility to mumps measurement QTL GWAS1162838 (human)) Homo sapiens

Symbol: GWAS1162838_H
Name: susceptibility to mumps measurement QTL GWAS1162838 (human)
RGD ID: 597066764
Trait: susceptibility to mumps measurement
LOD Score: Not Available
P Value: 4.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381554,128,741 - 54,128,742RGD_MAPPER_PIPELINEGRCh38
GRCh371554,420,938 - 54,420,939RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1162838_HHumansusceptibility to mumps measurement  IAGPrs191883222405850206 GWAS_CATALOGPMID:28928442

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1354378UNC13Cunc-13 homolog C155383760254633440Human


Peak: (rs191883222)
Human AssemblyChrPosition (strand)Source
GRCh381554,128,741 - 54,128,742RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597066764GWAS1162838_Hsusceptibility to mumps measurement QTL GWAS1162838 (human)0.000004susceptibility to mumps measurement155412874154128742Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1162838_H GCST005003 Mumps 31,227 European ancestry cases, 54,153 European ancestry controls ? NR 0.000004 5.398 rs191883222 0.5042 susceptibility to mumps measurement (EFO:0008404)
 PMID:28928442
Database
Acc Id
Source(s)
GWAS Catalog GCST005003 GWAS Catalog

Note Type Note Reference