GWAS1161320_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1161320_H (type 1 diabetes mellitus QTL GWAS1161320 (human)) Homo sapiens

Symbol: GWAS1161320_H
Name: type 1 diabetes mellitus QTL GWAS1161320 (human)
RGD ID: 597065246
Trait: type 1 diabetes mellitus
LOD Score: Not Available
P Value: 3.0E-22
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381611,100,914 - 11,100,915RGD_MAPPER_PIPELINEGRCh38
GRCh371611,194,771 - 11,194,772RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1161320_HHumantype 1 diabetes mellitus  IAGPrs12927355405850206Based on the MONDO term ID from GWASGWAS_CATALOGPMID:25751624


#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1604037CLEC16AC-type lectin domain containing 16A161094456411182186Human


Peak: (rs12927355)
Human AssemblyChrPosition (strand)Source
GRCh381611,100,914 - 11,100,915RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597073207GWAS1169281_Hmultiple sclerosis QTL GWAS1169281 (human)6e-46multiple sclerosis161110091411100915Human
597065246GWAS1161320_Htype 1 diabetes mellitus QTL GWAS1161320 (human)3e-22type 1 diabetes mellitus161110091411100915Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1161320_H GCST005536 Type 1 diabetes 6,683 European ancestry cases, 12,173 European ancestry controls, 2,601 European ancestry affected sibling pair families, 69 European ancestry trios C 0.68 3E-22 21.523 rs12927355 1.2195122 PMID:25751624
GWAS1169281_H GCST005531 Multiple sclerosis 14,498 European ancestry cases, 24,091 European ancestry controls G 0.69 6E-46 45.222 rs12927355 1.2 PMID:24076602
GWAS1694682_H GCST90013791 Type 1 diabetes 15,573 European ancestry cases, 158,408 European ancestry controls T 0.3226 7E-23 22.155 rs12927355 0.86 PMID:39749473
Database
Acc Id
Source(s)
GWAS Catalog GCST005536 GWAS Catalog

Note Type Note Reference