GWAS1160245_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1160245_H (systolic blood pressure QTL GWAS1160245 (human)) Homo sapiens

Symbol: GWAS1160245_H
Name: systolic blood pressure QTL GWAS1160245 (human)
RGD ID: 597064171
Trait: systolic blood pressure
Measurement Type: systolic blood pressure   (CMO:0000004)    
LOD Score: Not Available
P Value: 7.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38116,015,154 - 16,015,155RGD_MAPPER_PIPELINEGRCh38
GRCh37116,341,649 - 16,341,650RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1160245_HHumansystolic blood pressure  IAGPrs1048238405850206 GWAS_CATALOGPMID:28739976

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1160245_HHumansystolic blood pressure  IAGPrs1048238405850206 GWAS_CATALOGPMID:28739976

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
736091HSPB7heat shock protein family B (small) member 711601402916019594Human


Peak: (rs1048238)
Human AssemblyChrPosition (strand)Source
GRCh38116,015,154 - 16,015,155RGD_MAPPER_PIPELINE


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597065958GWAS1162032_Hsystolic blood pressure QTL GWAS1162032 (human)0.0000008systolic blood pressuresystolic blood pressure (CMO:0000004)11601515416015155Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597128998GWAS1225072_Hdiastolic blood pressure QTL GWAS1225072 (human)3e-16diastolic blood pressurediastolic blood pressure (CMO:0000005)11601515416015155Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
597195732GWAS1291806_Hsystolic blood pressure QTL GWAS1291806 (human)2e-14systolic blood pressuresystolic blood pressure (CMO:0000004)11601515416015155Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597064171GWAS1160245_Hsystolic blood pressure QTL GWAS1160245 (human)7e-12systolic blood pressuresystolic blood pressure (CMO:0000004)11601515416015155Human

1 to 9 of 9 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1160245_H GCST004776 Systolic blood pressure 150,134 European ancestry individuals T 0.567 7E-12 11.155 rs1048238 0.347 systolic blood pressure (EFO:0006335)
 PMID:28739976
GWAS1162032_H GCST004776 Systolic blood pressure 150,134 European ancestry individuals T 0.571 8E-7 6.097 rs1048238 0.366 systolic blood pressure (EFO:0006335)
 PMID:28739976
GWAS1225072_H GCST90310295 Diastolic blood pressure 1,028,980 European ancestry individuals T NR 3E-16 15.523 rs1048238 0.1263 diastolic blood pressure (EFO:0006336)
 PMID:38689001
GWAS1291806_H GCST90310294 Systolic blood pressure 1,028,980 European ancestry individuals T NR 2E-14 13.699 rs1048238 0.1906 systolic blood pressure (EFO:0006335)
 PMID:38689001
Database
Acc Id
Source(s)
GWAS Catalog GCST004776 GWAS Catalog

Note Type Note Reference