GWAS1157601_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1157601_H (age at menarche QTL GWAS1157601 (human)) Homo sapiens

Symbol: GWAS1157601_H
Name: age at menarche QTL GWAS1157601 (human)
RGD ID: 597061527
Trait: age at menarche
LOD Score: Not Available
P Value: 1.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381554,072,564 - 54,072,565RGD_MAPPER_PIPELINEGRCh38
GRCh371554,364,761 - 54,364,762RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1157601_HHumanage at menarche  IAGPrs11071027405850206 GWAS_CATALOGPMID:30595370

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1354378UNC13Cunc-13 homolog C155383760254633440Human


Peak: (rs11071027)
Human AssemblyChrPosition (strand)Source
GRCh381554,072,564 - 54,072,565RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597061527GWAS1157601_Hage at menarche QTL GWAS1157601 (human)1e-08age at menarche155407256454072565Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1157601_H GCST007078 Menarche (age at onset) approximately 242,000 European ancestry individuals ? NR 1E-8 8 rs11071027 N/A age at menarche (EFO:0004703)
 PMID:30595370
Database
Acc Id
Source(s)
GWAS Catalog GCST007078 GWAS Catalog

Note Type Note Reference