GWAS1154810_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1154810_H (BMI-adjusted waist circumference QTL GWAS1154810 (human)) Homo sapiens

Symbol: GWAS1154810_H
Name: BMI-adjusted waist circumference QTL GWAS1154810 (human)
RGD ID: 597058736
Trait: body size trait   (VT:0100005)    
LOD Score: Not Available
P Value: 7.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382046,928,830 - 46,928,831RGD_MAPPER_PIPELINEGRCh38
GRCh372045,557,469 - 45,557,470RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1154810_HHumanbody size trait  IAGPrs6066121405850206 GWAS_CATALOGPMID:31669095

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1154810_HHumanBMI-adjusted waist circumference  IAGPrs6066121405850206 GWAS_CATALOGPMID:31669095

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1350703EYA2EYA transcriptional coactivator and phosphatase 2204689484347188844Human


Peak: (rs6066121)
Human AssemblyChrPosition (strand)Source
GRCh382046,928,830 - 46,928,831RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597190747GWAS1286821_Hsex hormone-binding globulin measurement QTL GWAS1286821 (human)8e-09sex hormone-binding globulin measurement204692883046928831Human
1300007BP29_HBlood pressure QTL 29 (human)Blood pressurehypertension susceptibility203653600562536005Human
597058736GWAS1154810_HBMI-adjusted waist circumference QTL GWAS1154810 (human)7e-09body size trait (VT:0100005)204692883046928831Human
597145692GWAS1241766_Hposterior thigh muscle fat infiltration measurement QTL GWAS1241766 (human)6e-11posterior thigh muscle fat infiltration measurement204692883046928831Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1154810_H GCST009867 Waist circumference adjusted for body mass index 457,690 European ancestry individuals ? NR 7E-9 8.155 rs6066121 N/A BMI-adjusted waist circumference (EFO:0007789)
 PMID:31669095
GWAS1241766_H GCST90267355 Posterior thigh muscle fat infiltration percentage 32,956 European ancestry individuals G 0.44 6E-11 10.222 rs6066121 6.53 posterior thigh muscle fat infiltration measurement (EFO:0020934)
 PMID:36402844
GWAS1286821_H GCST90239821 Sex hormone-binding globulin levels 163,363 British ancestry men ? NR 8E-9 8.097 rs6066121 0.0187832 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:36653534
Database
Acc Id
Source(s)
GWAS Catalog GCST009867 GWAS Catalog

Note Type Note Reference