GWAS1154046_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1154046_H (basophil count QTL GWAS1154046 (human)) Homo sapiens

Symbol: GWAS1154046_H
Name: basophil count QTL GWAS1154046 (human)
RGD ID: 597057972
Trait: basophil quantity   (VT:0002607)    
Measurement Type: blood basophil count   (CMO:0000034)    
blood granulocyte count   (CMO:0000111)    
LOD Score: Not Available
P Value: 8.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382050,533,973 - 50,533,974RGD_MAPPER_PIPELINEGRCh38
GRCh372049,150,510 - 49,150,511RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1154046_HHumanblood basophil count  IAGPrs6091176405850206 GWAS_CATALOGPMID:32888494
GWAS1154046_HHumanblood granulocyte count  IAGPrs6091176405850206 GWAS_CATALOGPMID:32888494

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1154046_HHumanbasophil quantity  IAGPrs6091176405850206 GWAS_CATALOGPMID:32888494

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1154046_HHumanbasophil count  IAGPrs6091176405850206 GWAS_CATALOGPMID:32888494

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1343639PTPN1protein tyrosine phosphatase non-receptor type 1205051038350585241Human


Peak: (rs6091176)
Human AssemblyChrPosition (strand)Source
GRCh382050,533,973 - 50,533,974RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2292864PRSTS43_HProstate tumor susceptibility QTL 43 (human)0.620.05Prostate tumor susceptibility204730303964444167Human
597057972GWAS1154046_Hbasophil count QTL GWAS1154046 (human)8e-10basophil quantity (VT:0002607)blood basophil count (CMO:0000034)205053397350533974Human
1300007BP29_HBlood pressure QTL 29 (human)Blood pressurehypertension susceptibility203653600562536005Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1154046_H GCST90002379 Basophil count 408,112 British individuals T 0.260639 8E-10 9.097 rs6091176 0.015584568 basophil count (EFO:0005090)
 PMID:32888494
Database
Acc Id
Source(s)
GWAS Catalog GCST90002379 GWAS Catalog

Note Type Note Reference