GWAS1152704_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1152704_H (Eczematoid dermatitis QTL GWAS1152704 (human)) Homo sapiens

Symbol: GWAS1152704_H
Name: Eczematoid dermatitis QTL GWAS1152704 (human)
RGD ID: 597056630
Trait: Eczematoid dermatitis
LOD Score: Not Available
P Value: 1.0E-14
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381611,129,597 - 11,129,598RGD_MAPPER_PIPELINEGRCh38
GRCh371611,223,454 - 11,223,455RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1152704_HHumanEczematoid dermatitis  IAGPrs11645657405850206 GWAS_CATALOGPMID:31361310

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1604037CLEC16AC-type lectin domain containing 16A161094456411182186Human
38631832LOC105371081uncharacterized LOC105371081161112937111135050Human


Peak: (rs11645657)
Human AssemblyChrPosition (strand)Source
GRCh381611,129,597 - 11,129,598RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597056630GWAS1152704_HEczematoid dermatitis QTL GWAS1152704 (human)1e-14Eczematoid dermatitis161112959711129598Human
597030709GWAS1126783_Hasthma, allergic disease QTL GWAS1126783 (human)7e-17asthma, allergic disease161112959711129598Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1152704_H GCST009718 Eczema 7,884 European ancestry cases, 239,773 European ancestry controls C 0.4397 1E-14 14 rs11645657 1.14 Eczematoid dermatitis (HP:0000964)
 PMID:31361310
GWAS1126783_H GCST007563 Allergic disease (asthma, hay fever or eczema) 25,685 European ancestry allergic diseases cases, 76,768 European ancestry controls ? NR 7E-17 16.155 rs11645657 1.09 PMID:29785011
Database
Acc Id
Source(s)
GWAS Catalog GCST009718 GWAS Catalog

Note Type Note Reference