GWAS1152137_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1152137_H (reaction time measurement QTL GWAS1152137 (human)) Homo sapiens

Symbol: GWAS1152137_H
Name: reaction time measurement QTL GWAS1152137 (human)
RGD ID: 597056063
Trait: cognitive behavior trait   (VT:0010450)    
LOD Score: Not Available
P Value: 2.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381547,416,209 - 47,416,210RGD_MAPPER_PIPELINEGRCh38
GRCh371547,708,406 - 47,708,407RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1152137_HHumancognitive behavior trait  IAGPrs16959433405850206Based on the EFO term IDGWAS_CATALOGPMID:29844566

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1152137_HHumanreaction time measurement  IAGPrs16959433405850206 GWAS_CATALOGPMID:29844566

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1605040SEMA6Dsemaphorin 6D154718408947774228Human


Peak: (rs16959433)
Human AssemblyChrPosition (strand)Source
GRCh381547,416,209 - 47,416,210RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597056063GWAS1152137_Hreaction time measurement QTL GWAS1152137 (human)0.000002cognitive behavior trait (VT:0010450)154741620947416210Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1152137_H GCST006268 Reaction time 330,069 European ancestry individuals ? NR 0.000002 5.699 rs16959433 0.0081988 reaction time measurement (EFO:0008393)
 PMID:29844566
Database
Acc Id
Source(s)
GWAS Catalog GCST006268 GWAS Catalog

Note Type Note Reference