GWAS1151454_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1151454_H (rosacea severity measurement QTL GWAS1151454 (human)) Homo sapiens

Symbol: GWAS1151454_H
Name: rosacea severity measurement QTL GWAS1151454 (human)
RGD ID: 597055380
Trait: rosacea severity measurement
LOD Score: Not Available
P Value: 7.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381547,652,585 - 47,652,586RGD_MAPPER_PIPELINEGRCh38
GRCh371547,944,782 - 47,944,783RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1151454_HHumanrosacea severity measurement  IAGPrs1369639405850206 GWAS_CATALOGPMID:29771307

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1605040SEMA6Dsemaphorin 6D154718408947774228Human


Peak: (rs1369639)
Human AssemblyChrPosition (strand)Source
GRCh381547,652,585 - 47,652,586RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
597055380GWAS1151454_Hrosacea severity measurement QTL GWAS1151454 (human)0.000007rosacea severity measurement154765258547652586Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1151454_H GCST005790 Rosacea symptom severity 73,265 European ancestry individuals T NR 0.000007 5.155 rs1369639 0.220017 rosacea severity measurement (EFO:0009180)
 PMID:29771307
Database
Acc Id
Source(s)
GWAS Catalog GCST005790 GWAS Catalog

Note Type Note Reference