GWAS1147740_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1147740_H (vitamin D measurement QTL GWAS1147740 (human)) Homo sapiens

Symbol: GWAS1147740_H
Name: vitamin D measurement QTL GWAS1147740 (human)
RGD ID: 597051666
Trait: vitamin D measurement
LOD Score: Not Available
P Value: 9.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3812,398,222 - 2,398,223RGD_MAPPER_PIPELINEGRCh38
GRCh3712,329,661 - 2,329,662RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1147740_HHumanvitamin D measurement  IAGPrs6698680405850206 GWAS_CATALOGPMID:32059762

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1351700RER1retention in endoplasmic reticulum sorting receptor 1123918412405436Human


Peak: (rs6698680)
Human AssemblyChrPosition (strand)Source
GRCh3812,398,222 - 2,398,223RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597051666GWAS1147740_Hvitamin D measurement QTL GWAS1147740 (human)9e-10vitamin D measurement123982222398223Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
597157739GWAS1253813_Hfatty acid measurement QTL GWAS1253813 (human)1e-10fatty acid measurement123982222398223Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1147740_H GCST010144 Serum 25-Hydroxyvitamin D levels 443,734 European ancestry individuals G 0.464195 9E-10 9.046 rs6698680 0.011928 vitamin D measurement (EFO:0004631)
 PMID:32059762
GWAS1253813_H GCST90092932 Ratio of omega-3 fatty acids to total fatty acids 115,006 European ancestry individuals A 0.538027 1E-10 10 rs6698680 0.0255062 fatty acid measurement (EFO:0005110)
 PMID:35213538
Database
Acc Id
Source(s)
GWAS Catalog GCST010144 GWAS Catalog

Note Type Note Reference