GWAS1147043_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1147043_H (prostate carcinoma QTL GWAS1147043 (human)) Homo sapiens

Symbol: GWAS1147043_H
Name: prostate carcinoma QTL GWAS1147043 (human)
RGD ID: 597050969
Trait: prostate carcinoma
LOD Score: Not Available
P Value: 1.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381540,630,717 - 40,630,718RGD_MAPPER_PIPELINEGRCh38
GRCh371540,922,915 - 40,922,916RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1147043_HHumanprostate carcinoma  IAGPrs4924487405850206 GWAS_CATALOGPMID:29892016

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1147043_HHumanProstate cancer  IAGPrs4924487405850206 GWAS_CATALOGPMID:29892016
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1147043_HHumanprostate carcinoma  IAGPrs4924487405850206 GWAS_CATALOGPMID:29892016

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1603976KNL1kinetochore scaffold 1154059424940664342Human


Peak: (rs4924487)
Human AssemblyChrPosition (strand)Source
GRCh381540,630,717 - 40,630,718RGD_MAPPER_PIPELINE


1 to 9 of 9 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human
597050969GWAS1147043_Hprostate carcinoma QTL GWAS1147043 (human)1e-08prostate carcinoma154063071740630718Human

1 to 9 of 9 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1147043_H GCST006085 Prostate cancer 79,148 European ancestry cases, 61,106 European ancestry controls C 0.81 1E-8 8 rs4924487 1.06 prostate carcinoma (EFO:0001663)
 PMID:29892016
Database
Acc Id
Source(s)
GWAS Catalog GCST006085 GWAS Catalog

Note Type Note Reference