GWAS1146943_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1146943_H (prostate carcinoma QTL GWAS1146943 (human)) Homo sapiens

Symbol: GWAS1146943_H
Name: prostate carcinoma QTL GWAS1146943 (human)
RGD ID: 597050869
Trait: prostate carcinoma
LOD Score: Not Available
P Value: 6.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38110,496,040 - 10,496,041RGD_MAPPER_PIPELINEGRCh38
GRCh37110,556,097 - 10,556,098RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1146943_HHumanprostate carcinoma  IAGPrs636291405850206 GWAS_CATALOGPMID:29892016

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1146943_HHumanProstate cancer  IAGPrs636291405850206 GWAS_CATALOGPMID:29892016
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1146943_HHumanprostate carcinoma  IAGPrs636291405850206 GWAS_CATALOGPMID:29892016

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
68470PEX14peroxisomal biogenesis factor 1411047495010630758Human


Peak: (rs636291)
Human AssemblyChrPosition (strand)Source
GRCh38110,496,040 - 10,496,041RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
597050869GWAS1146943_Hprostate carcinoma QTL GWAS1146943 (human)0.0000006prostate carcinoma11049604010496041Human
407048778GWAS697754_Hprostate carcinoma QTL GWAS697754 (human)2e-08prostate carcinoma11049604010496041Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1146943_H GCST006085 Prostate cancer 79,148 European ancestry cases, 61,106 European ancestry controls A 0.68 6E-7 6.222 rs636291 1.04 prostate carcinoma (EFO:0001663)
 PMID:29892016
GWAS697754_H GCST002606 Prostate cancer 34,379 European ancestry cases, 33,164 European ancestry controls, 5,327 African ancestry cases, 5,136 African ancestry controls, 2,563 Japanese ancestry cases, 4,391 Japanese ancestry controls, 1,034 Latino cases, 1,046 Latino controls A 0.16 2E-8 7.699 rs636291 1.18 prostate carcinoma (EFO:0001663)
 PMID:25217961
Database
Acc Id
Source(s)
GWAS Catalog GCST006085 GWAS Catalog

Note Type Note Reference