GWAS1143646_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1143646_H (metabolic syndrome QTL GWAS1143646 (human)) Homo sapiens

Symbol: GWAS1143646_H
Name: metabolic syndrome QTL GWAS1143646 (human)
RGD ID: 597047572
Trait: metabolic syndrome
LOD Score: Not Available
P Value: 4.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38819,658,107 - 19,658,108RGD_MAPPER_PIPELINEGRCh38
GRCh37819,515,618 - 19,515,619RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1143646_HHumanabdominal obesity-metabolic syndrome 1  IAGPrs7017890405850206 GWAS_CATALOGPMID:39349817
GWAS1143646_HHumanMetabolic Syndrome  IAGPrs7017890405850206 GWAS_CATALOGPMID:39349817

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1143646_HHumanmetabolic syndrome  IAGPrs7017890405850206 GWAS_CATALOGPMID:39349817

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1601858CSGALNACT1chondroitin sulfate N-acetylgalactosaminyltransferase 181940416119757908Human


Peak: (rs7017890)
Human AssemblyChrPosition (strand)Source
GRCh38819,658,107 - 19,658,108RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298482BP2_HBlood pressure QTL 2 (human)1.8Blood pressurediastolic8695325632953256Human
596954517GWAS1074036_Hmetabolic syndrome QTL GWAS1074036 (human)4e-11metabolic syndrome81965810719658108Human
597047572GWAS1143646_Hmetabolic syndrome QTL GWAS1143646 (human)4e-11metabolic syndrome81965810719658108Human
1558703SCL6_HSerum cholesterol level QTL 1 (human)1.2Lipid levelHDL cholesterol81246863538468635Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1143646_H GCST90444487 Metabolic syndrome 1,384,348 European ancestry individuals ? NR 4E-11 10.398 rs7017890 0.0172299 metabolic syndrome (EFO:0000195)
 PMID:39349817
Database
Acc Id
Source(s)
GWAS Catalog GCST90444487 GWAS Catalog

Note Type Note Reference