GWAS1142325_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1142325_H (QT interval QTL GWAS1142325 (human)) Homo sapiens

Symbol: GWAS1142325_H
Name: QT interval QTL GWAS1142325 (human)
RGD ID: 597046251
Trait: QT interval
Measurement Type: QT interval   (CMO:0000235)    
LOD Score: Not Available
P Value: 4.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38123,439,740 - 23,439,741RGD_MAPPER_PIPELINEGRCh38
GRCh37123,766,233 - 23,766,234RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1142325_HHumanQT interval  IAGPrs1077514405850206 GWAS_CATALOGPMID:29874175

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1142325_HHumanQT interval  IAGPrs1077514405850206 GWAS_CATALOGPMID:29874175

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1346642ASAP3ArfGAP with SH3 domain, ankyrin repeat and PH domain 312342856323484631Human


Peak: (rs1077514)
Human AssemblyChrPosition (strand)Source
GRCh38123,439,740 - 23,439,741RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
406967021GWAS615997_Htotal cholesterol measurement QTL GWAS615997 (human)6e-09total cholesterol measurementblood total cholesterol level (CMO:0000051)12343974023439741Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597046251GWAS1142325_HQT interval QTL GWAS1142325 (human)4e-08QT intervalQT interval (CMO:0000235)12343974023439741Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1142325_H GCST010919 QT interval 83,884 European ancestry individuals, 9,610 African American individuals, 1,382 Hispanic individuals, 750 East Asian ancestry individuals. G 0.179 4E-8 7.398 rs1077514 0.58 QT interval (EFO:0004682)
 PMID:29874175
GWAS615997_H GCST002221 Cholesterol, total 94,595 European ancestry individuals C 0.15 6E-9 8.222 rs1077514 0.03 total cholesterol measurement (EFO:0004574)
 PMID:24097068
Database
Acc Id
Source(s)
GWAS Catalog GCST010919 GWAS Catalog

Note Type Note Reference