GWAS1134499_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1134499_H (gut microbiome measurement QTL GWAS1134499 (human)) Homo sapiens

Symbol: GWAS1134499_H
Name: gut microbiome measurement QTL GWAS1134499 (human)
RGD ID: 597038425
Trait: gut microbiome measurement
LOD Score: Not Available
P Value: 6.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381541,892,596 - 41,892,597RGD_MAPPER_PIPELINEGRCh38
GRCh371542,184,794 - 42,184,795RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1134499_HHumangut microbiome measurement  IAGPrs1618332405850206 GWAS_CATALOGPMID:33462482

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1322297SPTBN5spectrin beta, non-erythrocytic 5154184814641894053Human


Peak: (rs1618332)
Human AssemblyChrPosition (strand)Source
GRCh381541,892,596 - 41,892,597RGD_MAPPER_PIPELINE


1 to 10 of 11 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
597189220GWAS1285294_Hbody mass index QTL GWAS1285294 (human)1e-09body mass indexbody mass index (BMI) (CMO:0000105)154189259641892597Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human
597035496GWAS1131570_Hgut microbiome measurement QTL GWAS1131570 (human)0.000004gut microbiome measurement154189259641892597Human

1 to 10 of 11 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1134499_H GCST90011474 OTU99_8 (Ruminococcaceae) abundance 8,956 German ancestry individuals ? NR 0.000006 5.222 rs1618332 0.09648175 gut microbiome measurement (EFO:0007874)
 PMID:33462482
GWAS1131570_H GCST90011412 OTU97_8 (Ruminococcaceae) abundance 8,956 German ancestry individuals ? NR 0.000004 5.398 rs1618332 0.097655684 gut microbiome measurement (EFO:0007874)
 PMID:33462482
GWAS1285294_H GCST90255621 Body mass index 1,122,049 European ancestry individuals C NR 1E-9 9 rs1618332 0.0089 body mass index (EFO:0004340)
 PMID:36581621
Database
Acc Id
Source(s)
GWAS Catalog GCST90011474 GWAS Catalog

Note Type Note Reference