GWAS1134355_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1134355_H (renal transplant outcome measurement, APOL1 risk genotype carrier status, donor genotype effect measurement QTL GWAS1134355 (human)) Homo sapiens

Symbol: GWAS1134355_H
Name: renal transplant outcome measurement, APOL1 risk genotype carrier status, donor genotype effect measurement QTL GWAS1134355 (human)
RGD ID: 597038281
Trait: renal transplant outcome measurement, APOL1 risk genotype carrier status, donor genotype effect measurement
LOD Score: Not Available
P Value: 7.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3811,496,426 - 1,496,427RGD_MAPPER_PIPELINEGRCh38
GRCh3711,431,806 - 1,431,807RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1347003ATAD3BATPase family AAA domain containing 3B114717651509466Human


Peak: (rs1695847)
Human AssemblyChrPosition (strand)Source
GRCh3811,496,426 - 1,496,427RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
597038281GWAS1134355_Hrenal transplant outcome measurement, APOL1 risk genotype carrier status, donor genotype effect measurement QTL GWAS1134355 (human)0.0000007renal transplant outcome measurement, APOL1 risk genotype carrier status, donor genotype effect measurement114964261496427Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1134355_H GCST010682 Graft survival time in renal transplantation (donor effect) x APOL1 genotype interaction 532 African American donors ? NR 7E-7 6.155 rs1695847 3.88 renal transplant outcome measurement (EFO:0005199)
APOL1 risk genotype carrier status (EFO:0009324)
donor genotype effect measurement (EFO:0007892)
 PMID:32080893
Database
Acc Id
Source(s)
GWAS Catalog GCST010682 GWAS Catalog

Note Type Note Reference