GWAS1134233_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1134233_H (gut microbiome measurement QTL GWAS1134233 (human)) Homo sapiens

Symbol: GWAS1134233_H
Name: gut microbiome measurement QTL GWAS1134233 (human)
RGD ID: 597038159
Trait: gut microbiome measurement
LOD Score: Not Available
P Value: 5.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381548,572,600 - 48,572,601RGD_MAPPER_PIPELINEGRCh38
GRCh371548,864,797 - 48,864,798RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1134233_HHumangut microbiome measurement  IAGPrs12915677405850206 GWAS_CATALOGPMID:33462482

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
731577FBN1fibrillin 1154840831348645709Human


Peak: (rs12915677)
Human AssemblyChrPosition (strand)Source
GRCh381548,572,600 - 48,572,601RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597038159GWAS1134233_Hgut microbiome measurement QTL GWAS1134233 (human)0.000005gut microbiome measurement154857260048572601Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1134233_H GCST90011728 TestASV_7 (Bacteroides) prevalence 8,956 German ancestry individuals ? NR 0.000005 5.302 rs12915677 0.18126531 gut microbiome measurement (EFO:0007874)
 PMID:33462482
Database
Acc Id
Source(s)
GWAS Catalog GCST90011728 GWAS Catalog

Note Type Note Reference