GWAS1131549_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1131549_H (triglyceride measurement QTL GWAS1131549 (human)) Homo sapiens

Symbol: GWAS1131549_H
Name: triglyceride measurement QTL GWAS1131549 (human)
RGD ID: 597035475
Trait: triglyceride measurement
Measurement Type: blood triglyceride level   (CMO:0000118)    
LOD Score: Not Available
P Value: 2.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381560,610,313 - 60,610,314RGD_MAPPER_PIPELINEGRCh38
GRCh371560,902,512 - 60,902,513RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1131549_HHumanblood triglyceride level  IAGPrs12591786405850206 GWAS_CATALOGPMID:32203549

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1131549_HHumantriglyceride measurement  IAGPrs12591786405850206 GWAS_CATALOGPMID:32203549

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
9681205RORA-AS1RORA antisense RNA 1156047917860630639Human
1318175RORARAR related orphan receptor A156048828461229302Human


Peak: (rs12591786)
Human AssemblyChrPosition (strand)Source
GRCh381560,610,313 - 60,610,314RGD_MAPPER_PIPELINE


1 to 10 of 13 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597157975GWAS1254049_Hhigh density lipoprotein cholesterol measurement QTL GWAS1254049 (human)3e-09high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)156061031360610314Human
597035475GWAS1131549_Htriglyceride measurement QTL GWAS1131549 (human)2e-10triglyceride measurementblood triglyceride level (CMO:0000118)156061031360610314Human
597158813GWAS1254887_Hlipid measurement, high density lipoprotein cholesterol measurement QTL GWAS1254887 (human)9e-09lipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)156061031360610314Human
597314737GWAS1410811_Hcortical thickness QTL GWAS1410811 (human)4e-11cortical thickness156061031360610314Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
597131239GWAS1227313_Hcortical thickness QTL GWAS1227313 (human)7e-13cortical thickness156061031360610314Human
597041348GWAS1137422_Htriglyceride measurement QTL GWAS1137422 (human)3e-08triglyceride measurementblood triglyceride level (CMO:0000118)156061031360610314Human
597111941GWAS1208015_Htea consumption measurement QTL GWAS1208015 (human)0.0000002tea consumption measurementdrink intake measurement (CMO:0000771)156061031360610314Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597157056GWAS1253130_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1253130 (human)2e-08total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)156061031360610314Human

1 to 10 of 13 rows


1 to 14 of 14 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1131549_H GCST010244 Triglyceride levels 441,016 European ancestry individuals C 0.841082 2E-10 9.699 rs12591786 0.0176878 triglyceride measurement (EFO:0004530)
 PMID:32203549
GWAS1137422_H GCST010173 Triglyceride levels 324,694 British ancestry individuals ? NR 3E-8 7.523 rs12591786 0.0203 triglyceride measurement (EFO:0004530)
 PMID:32154731
GWAS1718592_H GCST90091060 Cortical surface area 35,657 White British ancestry individuals T 0.1514 1E-9 9 rs12591786 N/A cerebral cortex area attribute (OBA:2045267)
 PMID:34560273
GWAS1208015_H GCST008529 Tea consumption 336,898 European ancestry individuals C 0.841 2E-7 6.699 rs12591786 0.0111 tea consumption measurement (EFO:0010091)
 PMID:31046077
GWAS1227313_H GCST90091061 Cortical thickness 35,657 White British ancestry individuals T 0.1514 7E-13 12.155 rs12591786 N/A cortical thickness (EFO:0004840)
 PMID:34560273
GWAS1253130_H GCST90092944 Cholesterol levels in small HDL 115,082 European ancestry individuals C 0.841445 2E-8 7.699 rs12591786 0.0321854 total cholesterol measurement (EFO:0004574)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1254049_H GCST90092951 Concentration of small HDL particles 115,082 European ancestry individuals C 0.841445 3E-9 8.523 rs12591786 0.0340541 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1254887_H GCST90092950 Total lipid levels in small HDL 115,082 European ancestry individuals C 0.841445 9E-9 8.046 rs12591786 0.0328964 lipid measurement (EFO:0004529)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1682357_H GCST90092965 Phospholipids to total lipids ratio in small LDL 115,082 European ancestry individuals C 0.841445 1E-9 9 rs12591786 0.034946 low density lipoprotein cholesterol measurement (EFO:0004611)
phospholipids:total lipids ratio (EFO:0020946)
 PMID:35213538
GWAS822382_H GCST011126 Caffeine consumption from coffee or tea 362,316 European ancestry individuals C 0.842038 4E-10 9.398 rs12591786 0.020213 coffee consumption measurement (EFO:0006781)
tea consumption measurement (EFO:0010091)
 PMID:33287642
GWAS823437_H GCST011124 Caffeine consumption from tea 395,866 European ancestry individuals C 0.842256 3E-10 9.523 rs12591786 0.019576 tea consumption measurement (EFO:0010091)
 PMID:33287642
GWAS1372333_H GCST90132983 Tea intake (UKB data field 1488) 448,060 European ancestry individuals C 0.84153 6E-11 10.222 rs12591786 0.0190319 tea consumption measurement (EFO:0010091)
 PMID:32193382
GWAS1410811_H GCST90095131 Vertex-wise cortical thickness 33,748 European ancestry individuals T 0.17 4E-11 10.398 rs12591786 6.59 cortical thickness (EFO:0004840)
 PMID:34910505
GWAS1784681_H GCST90095130 Vertex-wise cortical surface area 33,748 European ancestry individuals T 0.17 4E-9 8.398 rs12591786 5.87 cerebral cortex area attribute (OBA:2045267)
 PMID:34910505
1 to 14 of 14 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST010244 GWAS Catalog

Note Type Note Reference