GWAS1130648_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1130648_H (heel bone mineral density QTL GWAS1130648 (human)) Homo sapiens

Symbol: GWAS1130648_H
Name: heel bone mineral density QTL GWAS1130648 (human)
RGD ID: 597034574
Trait: heel bone mineral density
Measurement Type: bone mineral density   (CMO:0001226)    
LOD Score: Not Available
P Value: 4.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381960,326 - 960,327RGD_MAPPER_PIPELINEGRCh38
GRCh371895,706 - 895,707RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1130648_HHumanbone mineral density  IAGPrs13303327405850206 GWAS_CATALOGPMID:30598549

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1130648_HHumanheel bone mineral density  IAGPrs13303327405850206 GWAS_CATALOGPMID:30598549

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs13303327)
Human AssemblyChrPosition (strand)Source
GRCh381960,326 - 960,327RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597229804GWAS1325878_Hheel bone mineral density QTL GWAS1325878 (human)8e-17heel bone mineral densitybone mineral density (CMO:0001226)1960326960327Human
597034574GWAS1130648_Hheel bone mineral density QTL GWAS1130648 (human)4e-13heel bone mineral densitybone mineral density (CMO:0001226)1960326960327Human
596953791GWAS1073310_Hbone density QTL GWAS1073310 (human)2e-08bone density1960326960327Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
407053999GWAS702975_Hheel bone mineral density QTL GWAS702975 (human)5e-13heel bone mineral densitybone mineral density (CMO:0001226)1960326960327Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1130648_H GCST006979 Heel bone mineral density 426,824 British ancestry individuals G 0.0857658 4E-13 12.398 rs13303327 0.0237969 heel bone mineral density (EFO:0009270)
 PMID:30598549
GWAS702975_H GCST007066 Heel bone mineral density approximately 446,000 European ancestry individuals ? NR 5E-13 12.302 rs13303327 N/A heel bone mineral density (EFO:0009270)
 PMID:30595370
GWAS1754895_H GCST90309353 Bone density (confirmatory factor analysis Factor 19) 115,532 European ancestry individuals ? NR 2E-8 7.699 rs13303327 N/A bone density (OBA:1000110)
 PMID:38965376
GWAS1325878_H GCST006433 Heel bone mineral density 394,929 European ancestry individuals ? NR 8E-17 16.097 rs13303327 0.0289903 heel bone mineral density (EFO:0009270)
 PMID:30048462
Database
Acc Id
Source(s)
GWAS Catalog GCST006979 GWAS Catalog

Note Type Note Reference