GWAS1125525_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1125525_H (balding measurement QTL GWAS1125525 (human)) Homo sapiens

Symbol: GWAS1125525_H
Name: balding measurement QTL GWAS1125525 (human)
RGD ID: 597029451
Trait: hair amount   (VT:0000416)    
Measurement Type: coat/hair morphological measurement   (CMO:0001807)    
LOD Score: Not Available
P Value: 6.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38116,201,723 - 16,201,724RGD_MAPPER_PIPELINEGRCh38
GRCh37116,528,218 - 16,528,219RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1125525_HHumancoat/hair morphological measurement  IAGPrs6676143405850206 GWAS_CATALOGPMID:30595370

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1125525_HHumanhair amount  IAGPrs6676143405850206 GWAS_CATALOGPMID:30595370

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1125525_HHumanbalding measurement  IAGPrs6676143405850206 GWAS_CATALOGPMID:30595370

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1312400ARHGEF19Rho guanine nucleotide exchange factor 1911619785416212652Human


Peak: (rs6676143)
Human AssemblyChrPosition (strand)Source
GRCh38116,201,723 - 16,201,724RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
597029451GWAS1125525_Hbalding measurement QTL GWAS1125525 (human)6e-10hair amount (VT:0000416)coat/hair morphological measurement (CMO:0001807)11620172316201724Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1125525_H GCST007038 Balding type 1 approximately 208,000 European ancestry individuals ? NR 6E-10 9.222 rs6676143 N/A balding measurement (EFO:0007825)
 PMID:30595370
Database
Acc Id
Source(s)
GWAS Catalog GCST007038 GWAS Catalog

Note Type Note Reference