GWAS1125507_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1125507_H (body mass index QTL GWAS1125507 (human)) Homo sapiens

Symbol: GWAS1125507_H
Name: body mass index QTL GWAS1125507 (human)
RGD ID: 597029433
Trait: body mass index
Measurement Type: body mass index (BMI)   (CMO:0000105)    
LOD Score: Not Available
P Value: 6.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381546,849,892 - 46,849,893RGD_MAPPER_PIPELINEGRCh38
GRCh371547,142,090 - 47,142,091RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1125507_HHumanbody mass index (BMI)  IAGPrs12899905405850206 GWAS_CATALOGPMID:30239722

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1125507_HHumanbody mass index  IAGPrs12899905405850206 GWAS_CATALOGPMID:30239722

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs12899905)
Human AssemblyChrPosition (strand)Source
GRCh381546,849,892 - 46,849,893RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
597177289GWAS1273363_Hbody mass index QTL GWAS1273363 (human)1e-08body mass indexbody mass index (BMI) (CMO:0000105)154684989246849893Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
597150172GWAS1246246_Hbody mass index QTL GWAS1246246 (human)5e-10body mass indexbody mass index (BMI) (CMO:0000105)154684989246849893Human
597029433GWAS1125507_Hbody mass index QTL GWAS1125507 (human)6e-10body mass indexbody mass index (BMI) (CMO:0000105)154684989246849893Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1125507_H GCST009004 Body mass index 806,834 European ancestry individuals T 0.2613 6E-10 9.222 rs12899905 0.0113 body mass index (EFO:0004340)
 PMID:30239722
GWAS1246246_H GCST90179150 Body mass index (MTAG) 694,649 European ancestry individuals T NR 5E-10 9.302 rs12899905 0.01133 body mass index (EFO:0004340)
 PMID:36376304
GWAS1273363_H GCST90255621 Body mass index 1,122,049 European ancestry individuals C NR 1E-8 8 rs12899905 0.0095 body mass index (EFO:0004340)
 PMID:36581621
Database
Acc Id
Source(s)
GWAS Catalog GCST009004 GWAS Catalog

Note Type Note Reference