GWAS1119248_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS1119248_H (Hodgkins lymphoma QTL GWAS1119248 (human)) Homo sapiens

Symbol: GWAS1119248_H
Name: Hodgkins lymphoma QTL GWAS1119248 (human)
RGD ID: 597023174
Trait: Hodgkins lymphoma
LOD Score: Not Available
P Value: 8.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381611,105,081 - 11,105,082RGD_MAPPER_PIPELINEGRCh38
GRCh371611,198,938 - 11,198,939RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1119248_HHumanHodgkin's lymphoma  IAGPrs34972832405850206 GWAS_CATALOGPMID:29196614

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1119248_HHumanHodgkin lymphoma  IAGPrs34972832405850206 GWAS_CATALOGPMID:29196614
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1119248_HHumanHodgkins lymphoma  IAGPrs34972832405850206 GWAS_CATALOGPMID:29196614

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1604037CLEC16AC-type lectin domain containing 16A161094456411182186Human


Peak: (rs34972832)
Human AssemblyChrPosition (strand)Source
GRCh381611,105,081 - 11,105,082RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597023174GWAS1119248_HHodgkins lymphoma QTL GWAS1119248 (human)0.0000008Hodgkins lymphoma161110508111105082Human
597023171GWAS1119245_Hnodular sclerosis Hodgkin lymphoma QTL GWAS1119245 (human)2e-08nodular sclerosis Hodgkin lymphoma161110508111105082Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1119248_H GCST005209 Hodgkin's lymphoma 3,077 European ancestry cases, 13,680 European ancestry controls A 0.19 8E-7 6.097 rs34972832 1.16 Hodgkins lymphoma (EFO:0000183)
 PMID:29196614
GWAS1119245_H GCST005211 Nodular sclerosis Hodgkin lymphoma 1,278 European ancestry cases, 14,325 European ancestry controls A 0.19 2E-8 7.699 rs34972832 1.24 nodular sclerosis Hodgkin lymphoma (EFO:0004708)
 PMID:29196614
GWAS1821279_H GCST90565134 Psoriasis 26,279 European ancestry cases, 442,230 European ancestry controls, 2,590 South Asian ancestry cases, 1,720 South Asian ancestry controls A NR 1E-8 8 rs34972832 0.07572 psoriasis (EFO:0000676)
 PMID:39885523
Database
Acc Id
Source(s)
GWAS Catalog GCST005209 GWAS Catalog

Note Type Note Reference