GWAS1117815_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1117815_H (interleukin 17 measurement QTL GWAS1117815 (human)) Homo sapiens

Symbol: GWAS1117815_H
Name: interleukin 17 measurement QTL GWAS1117815 (human)
RGD ID: 597021741
Trait: blood interleukin-17 amount   (VT:0008613)    
LOD Score: Not Available
P Value: 8.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381146,670,055 - 46,670,056RGD_MAPPER_PIPELINEGRCh38
GRCh371146,691,605 - 46,691,606RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1117815_HHumanblood interleukin-17 amount  IAGPrs139556855405850206Based on the EFO term IDGWAS_CATALOGPMID:27989323

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1117815_HHumaninterleukin 17 measurement  IAGPrs139556855405850206 GWAS_CATALOGPMID:27989323

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1602498ATG13autophagy related 13114661755346674518Human


Peak: (rs139556855)
Human AssemblyChrPosition (strand)Source
GRCh381146,670,055 - 46,670,056RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597021741GWAS1117815_Hinterleukin 17 measurement QTL GWAS1117815 (human)0.000008blood interleukin-17 amount (VT:0008613)114667005546670056Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1117815_H GCST004442 Interleukin-17 levels 7,760 Finnish ancestry individuals C NR 0.000008 5.097 rs139556855 0.3229 interleukin 17 measurement (EFO:0008174)
 PMID:27989323
Database
Acc Id
Source(s)
GWAS Catalog GCST004442 GWAS Catalog

Note Type Note Reference