GWAS1114620_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1114620_H (adolescent idiopathic scoliosis QTL GWAS1114620 (human)) Homo sapiens

Symbol: GWAS1114620_H
Name: adolescent idiopathic scoliosis QTL GWAS1114620 (human)
RGD ID: 597018546
Trait: adolescent idiopathic scoliosis
LOD Score: Not Available
P Value: 4.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381224,412,564 - 224,412,565RGD_MAPPER_PIPELINEGRCh38
GRCh371224,600,266 - 224,600,267RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1114620_HHumanidiopathic scoliosis  IAGPrs6675269405850206 GWAS_CATALOGPMID:30019117

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1114620_HHumanadolescent idiopathic scoliosis  IAGPrs6675269405850206 GWAS_CATALOGPMID:30019117

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1348746WDR26WD repeat domain 261224385146224434797Human


Peak: (rs6675269)
Human AssemblyChrPosition (strand)Source
GRCh381224,412,564 - 224,412,565RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597018546GWAS1114620_Hadolescent idiopathic scoliosis QTL GWAS1114620 (human)0.0000004adolescent idiopathic scoliosis1224412564224412565Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1114620_H GCST006287 Adolescent idiopathic scoliosis 196 cases, 303 controls ? NR 4E-7 6.398 rs6675269 N/A adolescent idiopathic scoliosis (EFO:0005423)
 PMID:30019117
Database
Acc Id
Source(s)
GWAS Catalog GCST006287 GWAS Catalog

Note Type Note Reference