GWAS1099343_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1099343_H (stroke QTL GWAS1099343 (human)) Homo sapiens

Symbol: GWAS1099343_H
Name: stroke QTL GWAS1099343 (human)
RGD ID: 596979824
Trait: stroke
LOD Score: Not Available
P Value: 4.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381556,012,299 - 56,012,300RGD_MAPPER_PIPELINEGRCh38
GRCh371556,304,497 - 56,304,498RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs12442374)
Human AssemblyChrPosition (strand)Source
GRCh381556,012,299 - 56,012,300RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597286074GWAS1382148_Hstroke QTL GWAS1382148 (human)0.0000004stroke155601229956012300Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
596979824GWAS1099343_Hstroke QTL GWAS1099343 (human)0.0000004stroke155601229956012300Human
407092244GWAS741220_Hstroke QTL GWAS741220 (human)0.0000004stroke155601229956012300Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1382148_H GCST005838 Stroke 40,585 European ancestry cases, 406,111 European ancestry controls, 17,369 East Asian ancestry cases, 28,195 East Asian ancestry controls, 2,437 South Asian ancestry cases, 6,707 South Asian ancestry controls, 5,541 African American cases, 15,154 African American controls, 365 Asian ancestry cases, 333 Asian ancestry controls, 865 Latin American cases, 692 Latin American controls G 0.14 4E-7 6.398 rs12442374 1.06 stroke (EFO:0000712)
 PMID:29531354
Database
Acc Id
Source(s)
GWAS Catalog GCST005838 GWAS Catalog

Note Type Note Reference