GWAS1096599_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1096599_H (Red cell distribution width QTL GWAS1096599 (human)) Homo sapiens

Symbol: GWAS1096599_H
Name: Red cell distribution width QTL GWAS1096599 (human)
RGD ID: 596977080
Trait: Red cell distribution width
LOD Score: Not Available
P Value: 6.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38716,660,352 - 16,660,353RGD_MAPPER_PIPELINEGRCh38
GRCh37716,699,977 - 16,699,978RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
731291BZW2basic leucine zipper and W2 domains 271664618116706517Human


Peak: (rs706027)
Human AssemblyChrPosition (strand)Source
GRCh38716,660,352 - 16,660,353RGD_MAPPER_PIPELINE


1 to 10 of 27 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597079767GWAS1175841_HRed cell distribution width QTL GWAS1175841 (human)7e-15Red cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)71666035216660353Human
406964418GWAS613394_Hreticulocyte count QTL GWAS613394 (human)9e-24reticulocyte quantity (VT:0003135)total reticulocyte count (CMO:0003020)71666035216660353Human
406988101GWAS637077_Hreticulocyte count QTL GWAS637077 (human)3e-25reticulocyte quantity (VT:0003135)total reticulocyte count (CMO:0003020)71666035216660353Human
597107614GWAS1203688_Hreticulocyte count QTL GWAS1203688 (human)2e-23reticulocyte quantity (VT:0003135)total reticulocyte count (CMO:0003020)71666035216660353Human
597088347GWAS1184421_HRed cell distribution width QTL GWAS1184421 (human)8e-16Red cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)71666035216660353Human
406960334GWAS609310_Hreticulocyte count QTL GWAS609310 (human)5e-26reticulocyte quantity (VT:0003135)total reticulocyte count (CMO:0003020)71666035216660353Human
1643402BMD2_HBone mineral density QTL 2 (human)2.690.0002Bone mineral density7122435431Human
406977042GWAS626018_Hreticulocyte count QTL GWAS626018 (human)8e-26reticulocyte quantity (VT:0003135)total reticulocyte count (CMO:0003020)71666035216660353Human
597084547GWAS1180621_Hreticulocyte measurement QTL GWAS1180621 (human)1e-11reticulocyte morphology trait (VT:0002424)red blood cell measurement (CMO:0001356)71666035216660353Human
597105217GWAS1201291_HRed cell distribution width QTL GWAS1201291 (human)6e-16Red cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)71666035216660353Human

1 to 10 of 27 rows


1 to 18 of 18 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS609310_H GCST004611 High light scatter reticulocyte count 170,761 European ancestry individuals T 0.3809 5E-26 25.302 rs706027 0.03911746 reticulocyte count (EFO:0007986)
 PMID:27863252
GWAS613394_H GCST004622 Reticulocyte count 170,641 European ancestry individuals T 0.3809 9E-24 23.046 rs706027 0.03734367 reticulocyte count (EFO:0007986)
 PMID:27863252
GWAS1148868_H GCST007074 Red cell distribution width approximately 445,000 European ancestry individuals ? NR 2E-14 13.699 rs706027 N/A Red cell distribution width (EFO:0009188)
 PMID:30595370
GWAS617487_H GCST004612 High light scatter reticulocyte percentage of red cells 170,763 European ancestry individuals T 0.3809 1E-27 27 rs706027 0.04043556 reticulocyte count (EFO:0007986)
 PMID:27863252
GWAS624244_H GCST004628 Immature fraction of reticulocytes 170,548 European ancestry individuals T 0.3809 2E-16 15.699 rs706027 0.03022379 reticulocyte count (EFO:0007986)
 PMID:27863252
GWAS626018_H GCST004619 Reticulocyte fraction of red cells 170,690 European ancestry individuals T 0.3809 8E-26 25.097 rs706027 0.03900041 reticulocyte count (EFO:0007986)
 PMID:27863252
GWAS637077_H GCST90002385 High light scatter reticulocyte count 408,112 British individuals T 0.379603 3E-25 24.523 rs706027 0.025234802 reticulocyte count (EFO:0007986)
 PMID:32888494
GWAS637306_H GCST90002326 Mean corpuscular hemoglobin 630,125 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals T 0.344865 1E-13 13 rs706027 N/A mean corpuscular hemoglobin concentration (EFO:0004528)
 PMID:32888493
GWAS642802_H GCST90002386 High light scatter reticulocyte percentage of red cells 408,112 British individuals T 0.379576 2E-27 26.699 rs706027 0.026291505 reticulocyte measurement (EFO:0010700)
 PMID:32888494
GWAS1175841_H GCST90002372 Red cell distribution width 563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals A 0.618309 7E-15 14.155 rs706027 N/A Red cell distribution width (EFO:0009188)
 PMID:32888493
GWAS1180621_H GCST90002387 Immature fraction of reticulocytes 408,112 British individuals T 0.379613 1E-11 11 rs706027 0.016546883 reticulocyte measurement (EFO:0010700)
 PMID:32888494
None Available GCST90002390 Mean corpuscular hemoglobin 408,112 British individuals T 0.379663 1E-13 13 rs706027 0.01677568 mean corpuscular hemoglobin (EFO:0004527)
 PMID:32888494
GWAS1184421_H GCST90002369 Red cell distribution width 531,774 European ancestry individuals A 0.621177 8E-16 15.097 rs706027 0.015615 Red cell distribution width (EFO:0009188)
 PMID:32888493
GWAS1201291_H GCST90002404 Red cell distribution width 408,112 British individuals T 0.379563 6E-16 15.222 rs706027 0.018432414 Red cell distribution width (EFO:0009188)
 PMID:32888494
GWAS1203569_H GCST90002406 Reticulocyte fraction of red cells 408,112 British individuals T 0.379592 6E-26 25.222 rs706027 0.025694475 reticulocyte measurement (EFO:0010700)
 PMID:32888494
GWAS1203688_H GCST90002405 Reticulocyte count 408,112 British individuals T 0.379605 2E-23 22.699 rs706027 0.024284804 reticulocyte count (EFO:0007986)
 PMID:32888494
GWAS1736355_H GCST90002392 Mean corpuscular volume 408,112 British individuals T 0.379633 4E-9 8.398 rs706027 0.0125498 erythrocyte volume (OBA:0003460)
 PMID:32888494
GWAS760746_H GCST007068 Mean corpuscular hemoglobin approximately 443,000 European ancestry individuals ? NR 4E-14 13.398 rs706027 N/A mean corpuscular hemoglobin (EFO:0004527)
 PMID:30595370
1 to 18 of 18 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90002404 GWAS Catalog

Note Type Note Reference