GWAS1095658_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1095658_H (Red cell distribution width QTL GWAS1095658 (human)) Homo sapiens

Symbol: GWAS1095658_H
Name: Red cell distribution width QTL GWAS1095658 (human)
RGD ID: 596976139
Trait: Red cell distribution width
LOD Score: Not Available
P Value: 1.0E-39
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381556,249,197 - 56,249,198RGD_MAPPER_PIPELINEGRCh38
GRCh371556,541,395 - 56,541,396RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1606392TEX9testis expressed 9155624397356460010Human


Peak: (rs2682049)
Human AssemblyChrPosition (strand)Source
GRCh381556,249,197 - 56,249,198RGD_MAPPER_PIPELINE


1 to 10 of 11 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
596950913GWAS1070432_HRed cell distribution width QTL GWAS1070432 (human)5e-43Red cell distribution width155624919756249198Human
596952076GWAS1071595_HRed cell distribution width QTL GWAS1071595 (human)9e-42Red cell distribution width155624919756249198Human
407382850GWAS1031826_Hobsolete_red blood cell distribution width QTL GWAS1031826 (human)5e-43obsolete_red blood cell distribution width155624919756249198Human
597384993GWAS1481067_HRed cell distribution width QTL GWAS1481067 (human)9e-42Red cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)155624919756249198Human
407084616GWAS733592_Hobsolete_red blood cell distribution width QTL GWAS733592 (human)1e-39obsolete_red blood cell distribution width155624919756249198Human
597381975GWAS1478049_HRed cell distribution width QTL GWAS1478049 (human)5e-43Red cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)155624919756249198Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
596976139GWAS1095658_HRed cell distribution width QTL GWAS1095658 (human)1e-39Red cell distribution width155624919756249198Human
407386871GWAS1035847_Hobsolete_red blood cell distribution width QTL GWAS1035847 (human)9e-42obsolete_red blood cell distribution width155624919756249198Human

1 to 10 of 11 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1478049_H GCST90002372 Red cell distribution width 563,352 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals C 0.58478 5E-43 42.302 rs2682049 N/A Red cell distribution width (EFO:0009188)
 PMID:32888493
GWAS1481067_H GCST90002369 Red cell distribution width 531,774 European ancestry individuals C 0.583199 9E-42 41.046 rs2682049 0.025974 Red cell distribution width (EFO:0009188)
 PMID:32888493
GWAS1528557_H GCST90002404 Red cell distribution width 408,112 British individuals T 0.417996 1E-39 39 rs2682049 0.029682564 Red cell distribution width (EFO:0009188)
 PMID:32888494
Database
Acc Id
Source(s)
GWAS Catalog GCST90002404 GWAS Catalog

Note Type Note Reference