GWAS1093050_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1093050_H (major depressive disorder QTL GWAS1093050 (human)) Homo sapiens

Symbol: GWAS1093050_H
Name: major depressive disorder QTL GWAS1093050 (human)
RGD ID: 596973531
Trait: major depressive disorder
LOD Score: Not Available
P Value: 4.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382137,445,397 - 37,445,398RGD_MAPPER_PIPELINEGRCh38
GRCh372138,817,699 - 38,817,700RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
737237DYRK1Adual specificity tyrosine phosphorylation regulated kinase 1A213736557337526358Human


Peak: (rs9974713)
Human AssemblyChrPosition (strand)Source
GRCh382137,445,397 - 37,445,398RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
407033712GWAS682688_Hunipolar depression QTL GWAS682688 (human)4e-08unipolar depression213744539737445398Human
597185489GWAS1281563_Hmajor depressive disorder QTL GWAS1281563 (human)4e-08major depressive disorder213744539737445398Human
2303081MAMTS49_HMammary tumor susceptibility QTL 49 (human)1.72Mammary tumor susceptibility211795044843950448Human
596973531GWAS1093050_Hmajor depressive disorder QTL GWAS1093050 (human)4e-08major depressive disorder213744539737445398Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1715001_H GCST009448 Longevity up to 482,000 European ancestry individuals A NR 0.000005 5.302 rs9974713 0.01115 life span trait (OBA:VT0005372)
 PMID:31484785
GWAS1281563_H GCST90319327 Depression 371,184 European ancestry cases, 978,703 European ancestry controls ? 0.23325 4E-8 7.398 rs9974713 0.019295 PMID:37464041
Database
Acc Id
Source(s)
GWAS Catalog GCST90319327 GWAS Catalog

Note Type Note Reference