GWAS1090698_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1090698_H (major depressive disorder QTL GWAS1090698 (human)) Homo sapiens

Symbol: GWAS1090698_H
Name: major depressive disorder QTL GWAS1090698 (human)
RGD ID: 596971179
Trait: major depressive disorder
LOD Score: Not Available
P Value: 4.0E-31
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3818,429,242 - 8,429,243RGD_MAPPER_PIPELINEGRCh38
GRCh3718,489,302 - 8,489,303RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1344336REREarginine-glutamic acid dipeptide repeats183524048817640Human
13793202RERE-AS1RERE antisense RNA 1184246458435016Human


Peak: (rs301799)
Human AssemblyChrPosition (strand)Source
GRCh3818,429,242 - 8,429,243RGD_MAPPER_PIPELINE


1 to 10 of 21 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597493659GWAS1589733_Hmajor depressive disorder QTL GWAS1589733 (human)4e-14major depressive disorder184292428429243Human
597478516GWAS1574590_Hobsessive-compulsive disorder, attention deficit hyperactivity disorder, Tourette syndrome, bipolar disorder, autism spectrum disorder, schizophrenia, anorexia nervosa, major depressive disorder QTL GWAS1574590 (human)2e-08obsessive-compulsive disorder, attention deficit hyperactivity disorder, Tourette syndrome, bipolar disorder, autism spectrum disorder, schizophrenia, anorexia nervosa, major depressive disorder184292428429243Human
407117711GWAS766687_Hunipolar depression, bipolar disorder QTL GWAS766687 (human)0.000001unipolar depression, bipolar disorder184292428429243Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
596972123GWAS1091642_Hobsessive-compulsive disorder, attention deficit hyperactivity disorder, Tourette syndrome, bipolar disorder, autism spectrum disorder, schizophrenia, anorexia nervosa, major depressive disorder QTL GWAS1091642 (human)2e-08obsessive-compulsive disorder, attention deficit hyperactivity disorder, Tourette syndrome, bipolar disorder, autism spectrum disorder, schizophrenia, anorexia nervosa, major depressive disorder184292428429243Human
596949828GWAS1069347_Hbipolar disorder, major depressive disorder QTL GWAS1069347 (human)0.000001bipolar disorder, major depressive disorder184292428429243Human
597587886GWAS1644746_Heosinophil count QTL GWAS1644746 (human)1e-20eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)184292428429243Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human

1 to 10 of 21 rows


1 to 9 of 9 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1644231_H GCST90479604 eosinophil (fraction, maximum, inv-norm transformed) 98,055 African American or Afro-Caribbean individuals, 47,410 Hispanic or Latin American individuals, 4,652 East Asian ancestry individuals, 335,542 European ancestry individuals C 0.4169 4E-18 17.398 rs301799 0.02567 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS1707426_H GCST002378 Thyroid peroxidase antibody positivity 1,769 European ancestry cases, 16,528 European ancestry controls C NR 0.000003 5.523 rs301799 1.11 obsolete_thyroid peroxidase antibody measurement (EFO:0005666)
 PMID:24586183
GWAS1644746_H GCST90479605 eosinophil (fraction, mean, inv-norm transformed) 98,055 African American or Afro-Caribbean individuals, 47,410 Hispanic or Latin American individuals, 4,652 East Asian ancestry individuals, 335,542 European ancestry individuals C 0.4169 1E-20 20 rs301799 0.02879 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS1644971_H GCST90479606 eosinophil (fraction, minimum, inv-norm transformed) 98,055 African American or Afro-Caribbean individuals, 47,410 Hispanic or Latin American individuals, 4,652 East Asian ancestry individuals, 335,542 European ancestry individuals C 0.4169 4E-11 10.398 rs301799 0.01771 eosinophil count (EFO:0004842)
 PMID:39024449
GWAS1496170_H GCST007342 Depression 118,811 European ancestry cases, 327,427 European ancestry controls, 127,552 cases, 233,763 controls C 0.4306 4E-31 30.398 rs301799 1.025641 PMID:30718901
GWAS1508377_H GCST010416 Bipolar disorder or major depressive disorder 164,933 European ancestry major depressive disorder cases, 20,352 European ancestry bipolar disorder cases, 439,741 European ancestry controls ? NR 0.000001 6 rs301799 N/A PMID:31926635
GWAS1553295_H GCST90061418 Physical activity (Total log acceleration 6pm-8pm) 88,411 European ancestry individuals C 0.422 2E-9 8.699 rs301799 0.027 physical activity measurement (EFO:0008002)
 PMID:35043453
GWAS1574590_H GCST009600 Anorexia nervosa, attention-deficit/hyperactivity disorder, autism spectrum disorder, bipolar disorder, major depression, obsessive-compulsive disorder, schizophrenia, or Tourette syndrome (pleiotropy) 19,009 European ancestry ADHD cases, 3,495 European ancestry anorexia cases, 18,381 European ancestry autism cases, 20,352 European ancestry bipolar disorder cases, 130,664 European ancestry major depression cases, 2,688 European ancestry OCD cases, 33,640 European ancestry schizophrenia cases, 4,645 European ancestry Tourette's cases, 494,162 European ancestry controls ? NR 2E-8 7.699 rs301799 N/A obsessive-compulsive disorder (EFO:0004242)
attention deficit hyperactivity disorder (EFO:0003888)
Tourette syndrome (EFO:0004895)
autism spectrum disorder (EFO:0003756)
 PMID:31835028
GWAS1589733_H GCST90239706 Depression 13,318 European ancestry cases, 12,684 European ancestry controls, 246,363 cases, 561,190 controls ? NR 4E-14 13.398 rs301799 0.0021 PMID:34924174
1 to 9 of 9 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST007342 GWAS Catalog

Note Type Note Reference