GWAS1089046_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1089046_H (triglyceride measurement, high density lipoprotein cholesterol measurement QTL GWAS1089046 (human)) Homo sapiens

Symbol: GWAS1089046_H
Name: triglyceride measurement, high density lipoprotein cholesterol measurement QTL GWAS1089046 (human)
RGD ID: 596969527
Trait: triglyceride measurement, high density lipoprotein cholesterol measurement
LOD Score: Not Available
P Value: 3.0E-24
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381558,388,439 - 58,388,440RGD_MAPPER_PIPELINEGRCh38
GRCh371558,680,638 - 58,680,639RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs2414577)
Human AssemblyChrPosition (strand)Source
GRCh381558,388,439 - 58,388,440RGD_MAPPER_PIPELINE


1 to 10 of 26 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
407152901GWAS801877_Hlow density lipoprotein particle size measurement QTL GWAS801877 (human)1e-31low density lipoprotein particle size measurement155838843958388440Human
597465949GWAS1562023_Hlysophosphatidylethanolamine measurement QTL GWAS1562023 (human)7e-09lysophosphatidylethanolamine measurement155838843958388440Human
597447390GWAS1543464_Htriglyceride measurement, high density lipoprotein cholesterol measurement QTL GWAS1543464 (human)3e-24triglyceride measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838843958388440Human
596969822GWAS1089341_Hlow density lipoprotein particle size measurement QTL GWAS1089341 (human)1e-26low density lipoprotein particle size measurement155838843958388440Human
597531154GWAS1627228_H1-dihomo-linolenoyl-GPE (20:3n3 or 6) measurement QTL GWAS1627228 (human)9e-221-dihomo-linolenoyl-GPE (20:3n3 or 6) measurement155838844058388441Human
597503759GWAS1599833_Htotal cholesterol measurement QTL GWAS1599833 (human)2e-12total cholesterol measurementblood total cholesterol level (CMO:0000051)155838844058388441Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
597457673GWAS1553747_Hhigh density lipoprotein cholesterol measurement QTL GWAS1553747 (human)7e-43high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)155838844058388441Human
597487940GWAS1584014_Hphosphatidylcholine measurement QTL GWAS1584014 (human)3e-10phosphatidylcholine measurement155838843958388440Human
407150622GWAS799598_Hlow density lipoprotein particle size measurement QTL GWAS799598 (human)1e-26low density lipoprotein particle size measurement155838843958388440Human

1 to 10 of 26 rows


1 to 17 of 17 rows
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1679094_H GCST90488261 Phosphatidylethanolamine (38:4) levels 1,149 European ancestry children or adolescents C 0.361 8E-21 20.097 rs2414577 0.418 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:39753034
GWAS1679097_H GCST90488262 Phosphatidylethanolamine (36:2) levels 1,149 European ancestry children or adolescents C 0.361 1E-9 9 rs2414577 0.276 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:39753034
GWAS1679098_H GCST90488267 Phosphatidylethanolamine (36:4) levels 1,149 European ancestry children or adolescents C 0.361 9E-9 8.046 rs2414577 0.259 phosphatidylethanolamine measurement (EFO:0010228)
 PMID:39753034
GWAS1673477_H GCST90480668 red blood cell count (RBC, maximum, inv-norm transformed) 114,767 African American or Afro-Caribbean individuals, 55,750 Hispanic or Latin American individuals, 5,943 East Asian ancestry individuals, 405,357 European ancestry individuals T 0.6123 4E-12 11.398 rs2414577 0.02031 erythrocyte count (EFO:0004305)
 PMID:39024449
GWAS1738579_H GCST90091537 Fasting mean diameter of LDL particles null C 0.379587875 1E-26 26 rs2414577 0.224442 LDL particle size (OBA:2050113)
 PMID:34610981
GWAS1738619_H GCST90091677 Postprandial mean diameter of LDL particles null C 0.381957222 1E-31 31 rs2414577 0.255617 LDL particle size (OBA:2050113)
 PMID:34610981
GWAS1539271_H GCST90092965 Phospholipids to total lipids ratio in small LDL 115,082 European ancestry individuals T 0.613586 1E-9 9 rs2414577 0.0258805 low density lipoprotein cholesterol measurement (EFO:0004611)
phospholipids:total lipids ratio (EFO:0020946)
 PMID:35213538
GWAS1542378_H GCST90092847 Cholesteryl esters to total lipids ratio in large HDL 115,082 European ancestry individuals T 0.613586 9E-21 20.046 rs2414577 0.0377714 cholesteryl esters:total lipids ratio (EFO:0020944)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1543464_H GCST90091767 Postprandial triglycerides levels in very large HDL null C 0.385759826 3E-24 23.523 rs2414577 0.227326 triglyceride measurement (EFO:0004530)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1548152_H GCST90091666 Postprandial triglycerides in HDL null C 0.381957222 1E-15 15 rs2414577 0.175206 remnant cholesterol measurement (EFO:0010815)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
GWAS1562023_H GCST008926 Lysophosphatidylethanolamine levels 2,045 European ancestry individuals C NR 7E-9 8.155 rs2414577 0.1893 lysophosphatidylethanolamine measurement (EFO:0010225)
 PMID:31551469
GWAS1584014_H GCST90010834 Phosphatidylcholine acyl-alkyl C38:2 levels 16,839 Caucasian ancestry individuals C 0.3841 3E-10 9.523 rs2414577 6.291 phosphatidylcholine measurement (EFO:0010226)
 PMID:33414548
GWAS1592257_H GCST90250833 Age-related macular degeneration or COVID-19 hospitalization (MTAG) 16,144 European ancestry AMD cases, 9,986 European ancestry COVID-19 hospitalization cases, 1,895,495 European ancestry controls ? NR 4E-16 15.398 rs2414577 0.06 age-related macular degeneration (EFO:0001365)
 PMID:36614910
GWAS1592265_H GCST90250832 Age-related macular degeneration or COVID-19 critical illness (MTAG) 16,144 European ancestry AMD cases, 5,101 European ancestry COVID-19 critical illness cases, 1,401,064 European ancestry controls ? NR 3E-16 15.523 rs2414577 0.06 age-related macular degeneration (EFO:0001365)
 PMID:36614910
None Available GCST90250834 Age-related macular degeneration or COVID-19 infection (MTAG) 16,144 European ancestry AMD cases, 38,984 European ancestry COVID-19 infection cases, 1,662,607 European ancestry controls ? NR 3E-16 15.523 rs2414577 0.06 age-related macular degeneration (EFO:0001365)
 PMID:36614910
GWAS1619458_H GCST90199831 1-stearoyl-2-oleoyl-GPE (18:0/18:1) levels 8,273 European ancestry individuals C 0.376173 7E-47 46.155 rs2414577 0.227092 1-stearoyl-2-oleoyl-GPE (18:0/18:1) measurement (EFO:0800269)
 PMID:36635386
GWAS1620849_H GCST90200068 1,2-dilinoleoyl-GPE (18:2/18:2) levels 6,804 European ancestry individuals C 0.385248 4E-11 10.398 rs2414577 0.115854 metabolite measurement (EFO:0004725)
 PMID:36635386
1 to 17 of 17 rows
Database
Acc Id
Source(s)
GWAS Catalog GCST90091767 GWAS Catalog

Note Type Note Reference