GWAS1084538_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1084538_H (diet measurement, sex hormone-binding globulin measurement QTL GWAS1084538 (human)) Homo sapiens

Symbol: GWAS1084538_H
Name: diet measurement, sex hormone-binding globulin measurement QTL GWAS1084538 (human)
RGD ID: 596965019
Trait: diet measurement, sex hormone-binding globulin measurement
LOD Score: Not Available
P Value: 8.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38819,412,566 - 19,412,567RGD_MAPPER_PIPELINEGRCh38
GRCh37819,270,077 - 19,270,078RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1601858CSGALNACT1chondroitin sulfate N-acetylgalactosaminyltransferase 181940416119757908Human


Peak: (rs56316193)
Human AssemblyChrPosition (strand)Source
GRCh38819,412,566 - 19,412,567RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298482BP2_HBlood pressure QTL 2 (human)1.8Blood pressurediastolic8695325632953256Human
597151814GWAS1247888_Hdiet measurement, sex hormone-binding globulin measurement QTL GWAS1247888 (human)0.000008eating behavior trait (VT:0001431)food intake measurement (CMO:0000772)81941256619412567Human
1558703SCL6_HSerum cholesterol level QTL 1 (human)1.2Lipid levelHDL cholesterol81246863538468635Human
596965019GWAS1084538_Hdiet measurement, sex hormone-binding globulin measurement QTL GWAS1084538 (human)0.000008diet measurement, sex hormone-binding globulin measurement81941256619412567Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1247888_H GCST90161223 Sex hormone binding globulin levels (adjusted for BMI) x vegetarianism interaction 133,007 European ancestry individuals T 0.837475 0.000008 5.097 rs56316193 0.155161 diet measurement (EFO:0008111)
sex hormone-binding globulin measurement (EFO:0004696)
 PMID:38990837
Database
Acc Id
Source(s)
GWAS Catalog GCST90161223 GWAS Catalog

Note Type Note Reference