GWAS1083215_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1083215_H (type 2 diabetes mellitus QTL GWAS1083215 (human)) Homo sapiens

Symbol: GWAS1083215_H
Name: type 2 diabetes mellitus QTL GWAS1083215 (human)
RGD ID: 596963696
Trait: type 2 diabetes mellitus
LOD Score: Not Available
P Value: 2.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381539,342,102 - 39,342,103RGD_MAPPER_PIPELINEGRCh38
GRCh371539,634,303 - 39,634,304RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
38627269LOC105370777uncharacterized LOC105370777153886480639421060Human


Peak: (rs1822105)
Human AssemblyChrPosition (strand)Source
GRCh381539,342,102 - 39,342,103RGD_MAPPER_PIPELINE


1 to 10 of 11 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
597367515GWAS1463589_Hcortical thickness QTL GWAS1463589 (human)5e-13cortical thickness153934210239342103Human
597458766GWAS1554840_Htype 2 diabetes mellitus QTL GWAS1554840 (human)2e-09type 2 diabetes mellitus153934210239342103Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
596963696GWAS1083215_Htype 2 diabetes mellitus QTL GWAS1083215 (human)2e-09type 2 diabetes mellitus153934210239342103Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human

1 to 10 of 11 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1723974_H GCST009518 Brain region volumes 19,629 British ancestry individuals ? NR 8E-14 13.097 rs1822105 N/A brain volume (OBA:2050009)
 PMID:31676860
GWAS1724099_H GCST009518 Brain region volumes 19,629 British ancestry individuals ? NR 5E-15 14.302 rs1822105 N/A brain volume (OBA:2050009)
 PMID:31676860
GWAS1733582_H GCST010282 Cortical surface area 33,992 European ancestry individuals T 0.5779 4E-31 30.398 rs1822105 29.059032 cerebral cortex area attribute (OBA:2045267)
 PMID:32193296
GWAS1733583_H GCST010282 Cortical surface area 33,992 European ancestry individuals T 0.5798 1E-12 12 rs1822105 20.590677 cerebral cortex area attribute (OBA:2045267)
 PMID:32193296
GWAS1463589_H GCST010281 Cortical thickness 33,992 European ancestry individuals T 0.5758 5E-13 12.302 rs1822105 0.004167167 cortical thickness (EFO:0004840)
 PMID:32193296
GWAS1554840_H GCST90444202 Type 2 diabetes 51,256 African, African American, East Asian, South Asian, European, Middle Eastern, admixed American, other or other admixed ancestry cases, 370,487 African, African American, East Asian, South Asian, European, Middle Eastern, admixed American, other or other admixed ancestry controls C 0.416647 2E-9 8.699 rs1822105 0.0471 PMID:39379762
Database
Acc Id
Source(s)
GWAS Catalog GCST90444202 GWAS Catalog

Note Type Note Reference