GWAS1077973_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1077973_H (Red cell distribution width QTL GWAS1077973 (human)) Homo sapiens

Symbol: GWAS1077973_H
Name: Red cell distribution width QTL GWAS1077973 (human)
RGD ID: 596958454
Trait: Red cell distribution width
LOD Score: Not Available
P Value: 3.0E-20
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38122,379,941 - 22,379,942RGD_MAPPER_PIPELINEGRCh38
GRCh37122,706,434 - 22,706,435RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records



Peak: (rs6684375)
Human AssemblyChrPosition (strand)Source
GRCh38122,379,941 - 22,379,942RGD_MAPPER_PIPELINE


1 to 10 of 11 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
596958454GWAS1077973_HRed cell distribution width QTL GWAS1077973 (human)3e-20Red cell distribution width12237994122379942Human
407406750GWAS1055726_Hobsolete_red blood cell distribution width QTL GWAS1055726 (human)3e-20obsolete_red blood cell distribution width12237994122379942Human
597047488GWAS1143562_HRed cell distribution width QTL GWAS1143562 (human)3e-20Red cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)12237994122379942Human
597105436GWAS1201510_HDrugs affecting bone structure and mineralization use measurement QTL GWAS1201510 (human)2e-08Drugs affecting bone structure and mineralization use measurement12237994122379942Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
407271946GWAS920922_Hheel bone mineral density QTL GWAS920922 (human)6e-147heel bone mineral densitybone mineral density (CMO:0001226)12237994122379942Human
597229332GWAS1325406_Hheel bone mineral density QTL GWAS1325406 (human)1e-126heel bone mineral densitybone mineral density (CMO:0001226)12237994122379942Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human

1 to 10 of 11 rows


Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1711131_H GCST004771 TB-LM or TBLH-BMD (pleiotropy) 8,327 European ancestry individuals, 2,087 individuals T 0.19 5E-9 8.302 rs6684375 N/A bone density (OBA:1000110)
lean body mass (EFO:0004995)
 PMID:28743860
GWAS1711160_H GCST004772 Bone mineral density (paediatric, total body less head) 8,327 European ancestry individuals, 2,087 individuals T 0.19 0.000002 5.699 rs6684375 0.0842 bone density (OBA:1000110)
 PMID:28743860
GWAS1143562_H GCST007074 Red cell distribution width approximately 445,000 European ancestry individuals ? NR 3E-20 19.523 rs6684375 N/A Red cell distribution width (EFO:0009188)
 PMID:30595370
GWAS1201510_H GCST007935 Medication use (drugs affecting bone structure and mineralization) 7,870 European ancestry cases, 207,798 European ancestry controls T 0.175671 2E-8 7.699 rs6684375 0.11816179 Drugs affecting bone structure and mineralization use measurement (EFO:0009936)
 PMID:31015401
GWAS1325406_H GCST006433 Heel bone mineral density 394,929 European ancestry individuals ? NR 1E-126 126 rs6684375 0.0631368 heel bone mineral density (EFO:0009270)
 PMID:30048462
GWAS920922_H GCST007066 Heel bone mineral density approximately 446,000 European ancestry individuals ? NR 6E-147 146.222 rs6684375 N/A heel bone mineral density (EFO:0009270)
 PMID:30595370
GWAS1792082_H GCST90321118 Bone mineral density mean 141,261 European ancestry individuals ? NR 1E-10 10 rs6684375 N/A bone density (OBA:1000110)
 PMID:37500982
Database
Acc Id
Source(s)
GWAS Catalog GCST007074 GWAS Catalog

Note Type Note Reference