GWAS1074571_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1074571_H (metabolic syndrome QTL GWAS1074571 (human)) Homo sapiens

Symbol: GWAS1074571_H
Name: metabolic syndrome QTL GWAS1074571 (human)
RGD ID: 596955052
Trait: metabolic syndrome
LOD Score: Not Available
P Value: 4.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3818,492,159 - 8,492,160RGD_MAPPER_PIPELINEGRCh38
GRCh3718,552,219 - 8,552,220RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1344336REREarginine-glutamic acid dipeptide repeats183524048817640Human


Peak: (rs4908761)
Human AssemblyChrPosition (strand)Source
GRCh3818,492,159 - 8,492,160RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
597048454GWAS1144528_Hmetabolic syndrome QTL GWAS1144528 (human)4e-11metabolic syndrome184921598492160Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
596955052GWAS1074571_Hmetabolic syndrome QTL GWAS1074571 (human)4e-11metabolic syndrome184921598492160Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1144528_H GCST90444487 Metabolic syndrome 1,384,348 European ancestry individuals ? NR 4E-11 10.398 rs4908761 0.00875015 metabolic syndrome (EFO:0000195)
 PMID:39349817
Database
Acc Id
Source(s)
GWAS Catalog GCST90444487 GWAS Catalog

Note Type Note Reference