GWAS1074037_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1074037_H (metabolic syndrome QTL GWAS1074037 (human)) Homo sapiens

Symbol: GWAS1074037_H
Name: metabolic syndrome QTL GWAS1074037 (human)
RGD ID: 596954518
Trait: metabolic syndrome
LOD Score: Not Available
P Value: 5.0E-25
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38819,718,960 - 19,718,961RGD_MAPPER_PIPELINEGRCh38
GRCh37819,576,471 - 19,576,472RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1601858CSGALNACT1chondroitin sulfate N-acetylgalactosaminyltransferase 181940416119757908Human


Peak: (rs10503660)
Human AssemblyChrPosition (strand)Source
GRCh38819,718,960 - 19,718,961RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1298482BP2_HBlood pressure QTL 2 (human)1.8Blood pressurediastolic8695325632953256Human
596954518GWAS1074037_Hmetabolic syndrome QTL GWAS1074037 (human)5e-25metabolic syndrome81971896019718961Human
597047573GWAS1143647_Hmetabolic syndrome QTL GWAS1143647 (human)5e-25metabolic syndrome81971896019718961Human
1558703SCL6_HSerum cholesterol level QTL 1 (human)1.2Lipid levelHDL cholesterol81246863538468635Human
597142110GWAS1238184_Hhigh density lipoprotein cholesterol measurement QTL GWAS1238184 (human)4e-17high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)81971896019718961Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1143647_H GCST90444487 Metabolic syndrome 1,384,348 European ancestry individuals ? NR 5E-25 24.302 rs10503660 0.0178335 metabolic syndrome (EFO:0000195)
 PMID:39349817
GWAS1238184_H GCST90179147 High-density lipoprotein levels (MTAG) 361,194 European ancestry individuals T NR 4E-17 16.398 rs10503660 0.0256 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:36376304
Database
Acc Id
Source(s)
GWAS Catalog GCST90444487 GWAS Catalog

Note Type Note Reference