GWAS1054630_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1054630_H (creatinine measurement QTL GWAS1054630 (human)) Homo sapiens

Symbol: GWAS1054630_H
Name: creatinine measurement QTL GWAS1054630 (human)
RGD ID: 407405654
Trait: creatinine measurement
Measurement Type: blood creatinine measurement   (CMO:0000767)    
LOD Score: Not Available
P Value: 2.0E-20
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh383186,717,581 - 186,717,582RGD_MAPPER_PIPELINEGRCh38
GRCh373186,435,370 - 186,435,371RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1054630_HHumanblood creatinine measurement  IAGPrs1050274405850206Based on the EFO term IDGWAS_CATALOGPMID:33462484

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1054630_HHumancreatinine measurement  IAGPrs1050274405850206 GWAS_CATALOGPMID:33462484
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1603713KNG1kininogen 13186717359186744410Human

Position Markers

Peak: (rs1050274)
Human AssemblyChrPosition (strand)Source
GRCh383186,717,581 - 186,717,582RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407406408GWAS1055384_Hcystatin C measurement QTL GWAS1055384 (human)7e-18cystatin C measurementblood cystatin C level (CMO:0002777)3186717581186717582Human
407405385GWAS1054361_Hglomerular filtration rate QTL GWAS1054361 (human)5e-21glomerular filtration rateglomerular filtration rate (CMO:0000490)3186717581186717582Human
407405654GWAS1054630_Hcreatinine measurement QTL GWAS1054630 (human)2e-20creatinine measurementblood creatinine measurement (CMO:0000767)3186717581186717582Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1054361_H GCST90019506 Estimated glomerular filtration rate 342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals A NR 5E-21 20.302 rs1050274 0.0239 glomerular filtration rate (EFO:0005208)
 PMID:33462484
GWAS1054630_H GCST90019502 Creatinine levels 342,376 European ancestry individuals, 6,016 African ancestry individuals, 7,339 South Asian ancestry individuals A NR 2E-20 19.699 rs1050274 0.0237 creatinine measurement (EFO:0004518)
 PMID:33462484
GWAS1055384_H GCST90019504 Cystatin C levels 342,399 European ancestry individuals, 6,015 African ancestry individuals, 7,338 South Asian ancestry individuals A NR 7E-18 17.155 rs1050274 0.022 cystatin C measurement (EFO:0004617)
 PMID:33462484
Database Acc Id Source(s)
GWAS Catalog GCST90019502 GWAS Catalog

RGD Curation Notes
Note Type Note Reference