GWAS1054151_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1054151_H (BMI-adjusted waist circumference QTL GWAS1054151 (human)) Homo sapiens

Symbol: GWAS1054151_H
Name: BMI-adjusted waist circumference QTL GWAS1054151 (human)
RGD ID: 407405175
Trait: BMI-adjusted waist circumference
LOD Score: Not Available
P Value: 1.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38117,016,429 - 17,016,430RGD_MAPPER_PIPELINEGRCh38
GRCh37117,342,924 - 17,342,925RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1054151_HHumanBMI-adjusted waist circumference  IAGPrs9435739405850206 GWAS_CATALOGPMID:34021172
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
155633495LOC127267747H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:17342829-1734336411701633417016869Human

Position Markers

Peak: (rs9435739)
Human AssemblyChrPosition (strand)Source
GRCh38117,016,429 - 17,016,430RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
407390472GWAS1039448_HBMI-adjusted hip circumference QTL GWAS1039448 (human)4e-14BMI-adjusted hip circumferencehip circumference (CMO:0000014)11701642917016430Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407392489GWAS1041465_HBMI-adjusted waist circumference QTL GWAS1041465 (human)1e-13BMI-adjusted waist circumference11701642917016430Human
407413580GWAS1062556_Hsexual dimorphism measurement QTL GWAS1062556 (human)2e-09sexual dimorphism measurement11701642917016430Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human
407405175GWAS1054151_HBMI-adjusted waist circumference QTL GWAS1054151 (human)1e-08BMI-adjusted waist circumference11701642917016430Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1039448_H GCST012227 Hip circumference adjusted for BMI 186,825 British ancestry men G NR 4E-14 13.398 rs9435739 0.02447 BMI-adjusted hip circumference (EFO:0008039)
 PMID:34021172
GWAS1041465_H GCST90020029 Waist circumference adjusted for body mass index 219,872 British ancestry women G NR 1E-13 13 rs9435739 0.0223178 BMI-adjusted waist circumference (EFO:0007789)
 PMID:34021172
GWAS1054151_H GCST012226 Waist circumference adjusted for body mass index 186,825 British ancestry men G NR 1E-8 8 rs9435739 0.0186635 BMI-adjusted waist circumference (EFO:0007789)
 PMID:34021172
GWAS1062556_H GCST90270118 Multi-trait sex score 141,980 European ancestry males ? NR 2E-9 8.699 rs9435739 N/A sexual dimorphism measurement (EFO:0021796)
 PMID:37277458
None Available GCST90446645 Body mass index 650,000 European ancestry individuals G 0.3301 2E-9 8.699 rs9435739 0.0116 body mass index (EFO:0004340)
 PMID:39375568
Database Acc Id Source(s)
GWAS Catalog GCST012226 GWAS Catalog

RGD Curation Notes
Note Type Note Reference