GWAS1053799_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1053799_H (type 2 diabetes mellitus QTL GWAS1053799 (human)) Homo sapiens

Symbol: GWAS1053799_H
Name: type 2 diabetes mellitus QTL GWAS1053799 (human)
RGD ID: 407404823
Trait: type 2 diabetes mellitus
LOD Score: Not Available
P Value: 1.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381589,873,508 - 89,873,509RGD_MAPPER_PIPELINEGRCh38
GRCh371590,416,740 - 90,416,741RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1053799_HHumantype 2 diabetes mellitus  IAGPrs7163629405850206 GWAS_CATALOGPMID:32514122
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1350010AP3S2adaptor related protein complex 3 subunit sigma 2158983059989893994Human
5013871ARPIN-AP3S2ARPIN-AP3S2 readthrough158983059989912952Human

Position Markers

Peak: (rs7163629)
Human AssemblyChrPosition (strand)Source
GRCh381589,873,508 - 89,873,509RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407404823GWAS1053799_Htype 2 diabetes mellitus QTL GWAS1053799 (human)1e-09type 2 diabetes mellitus158987350889873509Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1053799_H GCST90013693 Type 2 diabetes 40,250 Japanese ancestry cases, 170,615 Japanese ancestry controls C 0.775619392 1E-9 9 rs7163629 0.9404153 PMID:32514122
Database Acc Id Source(s)
GWAS Catalog GCST90013693 GWAS Catalog

RGD Curation Notes
Note Type Note Reference