GWAS1048097_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1048097_H (glomerular filtration rate QTL GWAS1048097 (human)) Homo sapiens

Symbol: GWAS1048097_H
Name: glomerular filtration rate QTL GWAS1048097 (human)
RGD ID: 407399121
Trait: glomerular filtration rate
Measurement Type: glomerular filtration rate   (CMO:0000490)    
LOD Score: Not Available
P Value: 9.0E-12
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38116,000,206 - 16,000,207RGD_MAPPER_PIPELINEGRCh38
GRCh37116,326,701 - 16,326,702RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1048097_HHumanglomerular filtration rate  IAGPrs12057768405850206Based on the EFO term IDGWAS_CATALOGPMID:35710981

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1048097_HHumanglomerular filtration rate  IAGPrs12057768405850206 GWAS_CATALOGPMID:35710981
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs12057768)
Human AssemblyChrPosition (strand)Source
GRCh38116,000,206 - 16,000,207RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
1576329MYI9_HMyocardial infarction susceptibility QTL 9 (human)12Myocardial infarction susceptibilityearly-onset1758550333585503Human
407399121GWAS1048097_Hglomerular filtration rate QTL GWAS1048097 (human)9e-12glomerular filtration rateglomerular filtration rate (CMO:0000490)11600020616000207Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human
1576325MYI1_HMyocardial infarction susceptibility QTL 1 (human)11.681e-12Myocardial infarction susceptibilityearly-onset1758550333585503Human
1643380BW316_HBody weight QTL 316 (human)2.620.0002Body weightBMI1758550333585503Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1048097_H GCST90100220 Estimated glomerular filtration rate (creatinine) 1,205,871 European ancestry individuals, 168,300 East Asian ancestry individuals, 63,553 African ancestry individuals, 23,509 Hispanic or Latin American individuals, 22,103 African American individuals, 21,791 Central Asian or South Asian ancestry individuals, 1,502 Middle Eastern ancestry individuals, 939 other admixed ancestry individuals, 602 Native American ancestry individuals, 150 Asian ancestry individuals, 339 individuals A 0.1318 9E-12 11.046 rs12057768 6.824 glomerular filtration rate (EFO:0005208)
 PMID:35710981
Database Acc Id Source(s)
GWAS Catalog GCST90100220 GWAS Catalog

RGD Curation Notes
Note Type Note Reference