GWAS1038760_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1038760_H (obsolete_red blood cell distribution width QTL GWAS1038760 (human)) Homo sapiens

Symbol: GWAS1038760_H
Name: obsolete_red blood cell distribution width QTL GWAS1038760 (human)
RGD ID: 407389784
Trait: obsolete_red blood cell distribution width
Measurement Type: red blood cell distribution width- standard deviation   (CMO:0003232)    
red blood cell distribution width-coefficient of variation   (CMO:0000041)    
LOD Score: Not Available
P Value: 7.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38177,629,707 - 7,629,708RGD_MAPPER_PIPELINEGRCh38
GRCh37177,533,025 - 7,533,026RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1038760_HHumanred blood cell distribution width- standard deviation  IAGPrs858518405850206Based on the EFO term IDGWAS_CATALOGPMID:27863252
GWAS1038760_HHumanred blood cell distribution width-coefficient of variation  IAGPrs858518405850206Based on the EFO term IDGWAS_CATALOGPMID:27863252

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1038760_HHumanobsolete_red blood cell distribution width  IAGPrs858518405850206 GWAS_CATALOGPMID:27863252
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
736172SHBGsex hormone binding globulin1776140647633372Human

Position Markers

Peak: (rs858518)
Human AssemblyChrPosition (strand)Source
GRCh38177,629,707 - 7,629,708RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407389784GWAS1038760_Hobsolete_red blood cell distribution width QTL GWAS1038760 (human)7e-09obsolete_red blood cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)1776297077629708Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
None Available GCST004621 Red cell distribution width 171,529 European ancestry individuals A 0.5748 7E-9 8.155 rs858518 0.02079998 Red cell distribution width (EFO:0009188)
 PMID:27863252
None Available GCST90444202 Type 2 diabetes 51,256 African, African American, East Asian, South Asian, European, Middle Eastern, admixed American, other or other admixed ancestry cases, 370,487 African, African American, East Asian, South Asian, European, Middle Eastern, admixed American, other or other admixed ancestry controls G 0.430879 2E-9 8.699 rs858518 0.0468 PMID:39379762
Database Acc Id Source(s)
GWAS Catalog GCST004621 GWAS Catalog

RGD Curation Notes
Note Type Note Reference