GWAS1036378_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1036378_H (low density lipoprotein cholesterol measurement QTL GWAS1036378 (human)) Homo sapiens

Symbol: GWAS1036378_H
Name: low density lipoprotein cholesterol measurement QTL GWAS1036378 (human)
RGD ID: 407387402
Trait: low density lipoprotein cholesterol measurement
Measurement Type: blood low density lipoprotein cholesterol level   (CMO:0000053)    
LOD Score: Not Available
P Value: 8.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381220,796,686 - 220,796,687RGD_MAPPER_PIPELINEGRCh38
GRCh371220,970,028 - 220,970,029RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1036378_HHumanblood low density lipoprotein cholesterol level  IAGPrs2642438405850206Based on the EFO term IDGWAS_CATALOGPMID:35884923

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1036378_HHumanlow density lipoprotein cholesterol measurement  IAGPrs2642438405850206 GWAS_CATALOGPMID:35884923
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1604320MTARC1mitochondrial amidoxime reducing component 11220786913220819659Human

Position Markers

Peak: (rs2642438)
Human AssemblyChrPosition (strand)Source
GRCh381220,796,686 - 220,796,687RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406910272GWAS559248_Htotal cholesterol measurement QTL GWAS559248 (human)4e-20total cholesterol measurementblood total cholesterol level (CMO:0000051)1220796686220796687Human
407090499GWAS739475_Hhigh density lipoprotein cholesterol measurement QTL GWAS739475 (human)2e-40high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
406966851GWAS615827_Hlow density lipoprotein cholesterol measurement, alcohol consumption measurement QTL GWAS615827 (human)6e-22low density lipoprotein cholesterol measurement, alcohol consumption measurementethanol drink intake rate (CMO:0001407)1220796686220796687Human
407353668GWAS1002644_Hvery low density lipoprotein cholesterol measurement, phospholipids:total lipids ratio QTL GWAS1002644 (human)8e-21very low density lipoprotein cholesterol measurement, phospholipids:total lipids ratioblood very low density lipoprotein cholesterol level (CMO:0000648)1220796686220796687Human
407377740GWAS1026716_Halkaline phosphatase measurement QTL GWAS1026716 (human)3e-41alkaline phosphatase measurementblood alkaline phosphatase activity level (CMO:0000576)1220796686220796687Human
407241795GWAS890771_Hfree cholesterol in large HDL measurement QTL GWAS890771 (human)1e-12aspartate aminotransferase measurementblood aspartate aminotransferase activity level (CMO:0000580)1220796686220796687Human
407352896GWAS1001872_Htriglycerides:total lipids ratio, very low density lipoprotein cholesterol measurement QTL GWAS1001872 (human)4e-19triglycerides:total lipids ratio, very low density lipoprotein cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)1220796686220796687Human
406971206GWAS620182_Hlow density lipoprotein cholesterol measurement, alcohol drinking QTL GWAS620182 (human)2e-22low density lipoprotein cholesterol measurement, alcohol drinkingblood low density lipoprotein cholesterol level (CMO:0000053)1220796686220796687Human
406978885GWAS627861_Hlow density lipoprotein cholesterol measurement QTL GWAS627861 (human)1e-08low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)1220796686220796687Human
407217743GWAS866719_Hcholesterol in IDL measurement QTL GWAS866719 (human)1e-13triglycerides to total lipids in very small VLDL percentage 1220796686220796687Human
407145807GWAS794783_Hnon-alcoholic fatty liver disease QTL GWAS794783 (human)0.000006non-alcoholic fatty liver disease1220796686220796687Human
407217486GWAS866462_Hnon-alcoholic fatty liver disease QTL GWAS866462 (human)6e-15non-alcoholic fatty liver disease1220796686220796687Human
406891084GWAS540060_Htotal cholesterol measurement QTL GWAS540060 (human)0.000005total cholesterol measurementblood total cholesterol level (CMO:0000051)1220796686220796687Human
407391834GWAS1040810_Htotal cholesterol measurement QTL GWAS1040810 (human)3e-57total cholesterol measurementblood total cholesterol level (CMO:0000051)1220796686220796687Human
407347028GWAS996004_Hserum alanine aminotransferase measurement QTL GWAS996004 (human)8e-23serum alanine aminotransferase measurementserum alanine aminotransferase activity level (CMO:0000575)1220796686220796687Human
407087190GWAS736166_Hapolipoprotein A 1 measurement QTL GWAS736166 (human)4e-42apolipoprotein A 1 measurementblood apolipoprotein AI level (CMO:0000520)1220796686220796687Human
407355998GWAS1004974_Hhigh density lipoprotein cholesterol measurement QTL GWAS1004974 (human)4e-34alkaline phosphatase measurementblood alkaline phosphatase activity level (CMO:0000576)1220796686220796687Human
407334236GWAS983212_Htotal cholesterol measurement QTL GWAS983212 (human)7e-10high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
407351132GWAS1000108_Hvery low density lipoprotein cholesterol measurement, cholesterol:total lipids ratio QTL GWAS1000108 (human)5e-23very low density lipoprotein cholesterol measurement, cholesterol:total lipids ratioblood very low density lipoprotein cholesterol level (CMO:0000648)1220796686220796687Human
407153509GWAS802485_Halkaline phosphatase measurement QTL GWAS802485 (human)9e-34alkaline phosphatase measurementblood alkaline phosphatase activity level (CMO:0000576)1220796686220796687Human
407258988GWAS907964_Hphospholipids:total lipids ratio QTL GWAS907964 (human)1e-16blood lipid amount (VT:0003949)blood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
406969963GWAS618939_Hlow density lipoprotein cholesterol measurement, alcohol drinking QTL GWAS618939 (human)7e-15low density lipoprotein cholesterol measurement, alcohol drinkingblood low density lipoprotein cholesterol level (CMO:0000053)1220796686220796687Human
407376995GWAS1025971_Htotal cholesterol measurement QTL GWAS1025971 (human)8e-19total cholesterol measurementblood total cholesterol level (CMO:0000051)1220796686220796687Human
407233641GWAS882617_Htotal lipids in HDL measurement QTL GWAS882617 (human)2e-15total lipids in medium HDL measurement 1220796686220796687Human
407366248GWAS1015224_Hserum alanine aminotransferase measurement QTL GWAS1015224 (human)9e-13low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)1220796686220796687Human
406914672GWAS563648_Hhigh density lipoprotein cholesterol measurement QTL GWAS563648 (human)0.0000005total cholesterol measurementblood total cholesterol level (CMO:0000051)1220796686220796687Human
407250291GWAS899267_Htotal lipids in IDL QTL GWAS899267 (human)9e-12total lipids in IDL1220796686220796687Human
407350654GWAS999630_Htotal cholesterol measurement QTL GWAS999630 (human)3e-13fatty acid measurementblood total cholesterol level (CMO:0000051)1220796686220796687Human
406956408GWAS605384_Hlow density lipoprotein cholesterol measurement QTL GWAS605384 (human)2e-12phospholipid measurementblood low density lipoprotein cholesterol level (CMO:0000053)1220796686220796687Human
406978172GWAS627148_Htriglyceride measurement, alcohol drinking QTL GWAS627148 (human)3e-10triglycerides:total lipids ratio, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)1220796686220796687Human
407332984GWAS981960_Hcirrhosis of liver QTL GWAS981960 (human)1e-43cirrhosis of liver1220796686220796687Human
407227770GWAS876746_Hfree cholesterol to total lipids in medium HDL percentage QTL GWAS876746 (human)4e-15free cholesterol to total lipids in medium HDL percentage 1220796686220796687Human
407351047GWAS1000023_Hvery low density lipoprotein cholesterol measurement, cholesterol:total lipids ratio QTL GWAS1000023 (human)9e-10triglycerides:total lipids ratio, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)1220796686220796687Human
407387402GWAS1036378_Hlow density lipoprotein cholesterol measurement QTL GWAS1036378 (human)0.000008low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)1220796686220796687Human
407353348GWAS1002324_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1002324 (human)3e-19free cholesterol:total lipids ratio, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
407380749GWAS1029725_Hhigh density lipoprotein cholesterol measurement QTL GWAS1029725 (human)2e-27high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
406949894GWAS598870_Htriglyceride measurement QTL GWAS598870 (human)0.000002triglyceride measurementblood triglyceride level (CMO:0000118)1220796686220796687Human
407222541GWAS871517_Hcholesteryl ester measurement QTL GWAS871517 (human)1e-14blood lipid amount (VT:0003949)blood total cholesterol level (CMO:0000051)1220796686220796687Human
407257358GWAS906334_Hphosphatidylcholine measurement QTL GWAS906334 (human)3e-11phosphatidylcholine measurement1220796686220796687Human
406952969GWAS601945_Halcohol consumption measurement, high density lipoprotein cholesterol measurement QTL GWAS601945 (human)8e-18blood lipid amount (VT:0003949)blood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
407358986GWAS1007962_Hvery low density lipoprotein cholesterol measurement, phospholipids:total lipids ratio QTL GWAS1007962 (human)7e-12very low density lipoprotein cholesterol measurement, phospholipids:total lipids ratioblood very low density lipoprotein cholesterol level (CMO:0000648)1220796686220796687Human
406958356GWAS607332_Htriglyceride measurement, alcohol consumption measurement QTL GWAS607332 (human)0.0000003high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
407353616GWAS1002592_Hcholesterol:total lipids ratio, low density lipoprotein cholesterol measurement QTL GWAS1002592 (human)8e-11cholesterol:total lipids ratio, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)1220796686220796687Human
407351834GWAS1000810_Hcholesteryl ester measurement, high density lipoprotein cholesterol measurement QTL GWAS1000810 (human)5e-14blood lipid amount (VT:0003949)blood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
407259431GWAS908407_Hsex hormone-binding globulin measurement QTL GWAS908407 (human)1e-30sex hormone-binding globulin measurement1220796686220796687Human
407349280GWAS998256_Hserum alanine aminotransferase measurement QTL GWAS998256 (human)7e-24serum alanine aminotransferase measurementblood very low density lipoprotein cholesterol level (CMO:0000648)1220796686220796687Human
407216930GWAS865906_Hphospholipids in large HDL measurement QTL GWAS865906 (human)4e-13phospholipids in large HDL measurementblood high density lipoprotein phospholipid level (CMO:0001565)1220796686220796687Human
407350827GWAS999803_Hsphingomyelin measurement QTL GWAS999803 (human)7e-20sphingomyelin measurement1220796686220796687Human
406972206GWAS621182_Htriglyceride measurement, alcohol consumption measurement QTL GWAS621182 (human)7e-09triglyceride measurement, alcohol consumption measurementethanol drink intake rate (CMO:0001407)1220796686220796687Human
407255863GWAS904839_Hcholesterol in large HDL measurement QTL GWAS904839 (human)4e-11cholesterol in large HDL measurement 1220796686220796687Human
407178039GWAS827015_Hlow density lipoprotein cholesterol measurement QTL GWAS827015 (human)1e-81low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)1220796686220796687Human
407392059GWAS1041035_Hhigh density lipoprotein cholesterol measurement QTL GWAS1041035 (human)9e-77high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
407398972GWAS1047948_Htotal cholesterol measurement QTL GWAS1047948 (human)2e-92total cholesterol measurementblood total cholesterol level (CMO:0000051)1220796686220796687Human
406979892GWAS628868_Hhigh density lipoprotein cholesterol measurement QTL GWAS628868 (human)5e-09very low density lipoprotein cholesterol measurement, cholesteryl esters:total lipids ratioblood very low density lipoprotein cholesterol level (CMO:0000648)1220796686220796687Human
407350832GWAS999808_Hfatty acid measurement QTL GWAS999808 (human)2e-25low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)1220796686220796687Human
406910264GWAS559240_Htotal cholesterol measurement QTL GWAS559240 (human)3e-16free cholesterol in medium HDL measurement blood low density lipoprotein cholesterol level (CMO:0000053)1220796686220796687Human
407352123GWAS1001099_Hfree cholesterol:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS1001099 (human)2e-11blood lipid amount (VT:0003949)blood very low density lipoprotein cholesterol level (CMO:0000648)1220796686220796687Human
406961215GWAS610191_Halcohol consumption measurement, high density lipoprotein cholesterol measurement QTL GWAS610191 (human)2e-13low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)1220796686220796687Human
407396663GWAS1045639_Htotal cholesterol measurement QTL GWAS1045639 (human)6e-37total cholesterol measurementblood total cholesterol level (CMO:0000051)1220796686220796687Human
407213765GWAS862741_Hapolipoprotein A 1 measurement QTL GWAS862741 (human)5e-15apolipoprotein A 1 measurementblood apolipoprotein AI level (CMO:0000520)1220796686220796687Human
407352001GWAS1000977_Hlipoprotein measurement QTL GWAS1000977 (human)6e-17lipoprotein measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
406917065GWAS566041_Hlow density lipoprotein cholesterol measurement QTL GWAS566041 (human)1e-19cholesterol:total lipids ratio, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)1220796686220796687Human
407351247GWAS1000223_Hlipid measurement, high density lipoprotein cholesterol measurement QTL GWAS1000223 (human)1e-18high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
407351246GWAS1000222_Hhigh density lipoprotein cholesterol measurement QTL GWAS1000222 (human)2e-16total cholesterol measurementblood total cholesterol level (CMO:0000051)1220796686220796687Human
406978248GWAS627224_Htriglyceride measurement, alcohol drinking QTL GWAS627224 (human)0.0000006high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
406917067GWAS566043_Hlow density lipoprotein cholesterol measurement QTL GWAS566043 (human)9e-24low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)1220796686220796687Human
407351501GWAS1000477_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1000477 (human)2e-17total cholesterol measurement, high density lipoprotein cholesterol measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)1220796686220796687Human
407350731GWAS999707_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS999707 (human)2e-09total cholesterol measurementblood total cholesterol level (CMO:0000051)1220796686220796687Human
407354327GWAS1003303_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1003303 (human)2e-20free cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
407358423GWAS1007399_Hvery low density lipoprotein cholesterol measurement, free cholesterol:total lipids ratio QTL GWAS1007399 (human)3e-08very low density lipoprotein cholesterol measurement, free cholesterol:total lipids ratioblood very low density lipoprotein cholesterol level (CMO:0000648)1220796686220796687Human
406962641GWAS611617_Halcohol consumption measurement, high density lipoprotein cholesterol measurement QTL GWAS611617 (human)0.000009alcohol consumption measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
406968016GWAS616992_Hlow density lipoprotein cholesterol measurement QTL GWAS616992 (human)5e-08low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)1220796686220796687Human
407352021GWAS1000997_Hcholesteryl ester measurement, very low density lipoprotein cholesterol measurement QTL GWAS1000997 (human)3e-14blood lipid amount (VT:0003949)blood very low density lipoprotein cholesterol level (CMO:0000648)1220796686220796687Human
407354323GWAS1003299_Hapolipoprotein A 1 measurement QTL GWAS1003299 (human)9e-18apolipoprotein A 1 measurementblood apolipoprotein AI level (CMO:0000520)1220796686220796687Human
407399391GWAS1048367_Hlow density lipoprotein cholesterol measurement QTL GWAS1048367 (human)2e-52low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)1220796686220796687Human
407352541GWAS1001517_Hfree cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS1001517 (human)1e-09free cholesterol measurement, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)1220796686220796687Human
407351773GWAS1000749_Hlipid measurement, high density lipoprotein cholesterol measurement QTL GWAS1000749 (human)5e-11lipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
407232734GWAS881710_Hlipoprotein measurement QTL GWAS881710 (human)2e-14liver lipid amount (VT:0010764)liver fat morphological measurement (CMO:0002187)1220796686220796687Human
406891228GWAS540204_Htotal cholesterol measurement QTL GWAS540204 (human)1e-22total cholesterol measurementblood total cholesterol level (CMO:0000051)1220796686220796687Human
407328997GWAS977973_Hhigh density lipoprotein cholesterol measurement QTL GWAS977973 (human)4e-08low density lipoprotein cholesterol measurement, lipid measurementblood lipid measurement (CMO:0000050)1220796686220796687Human
407244260GWAS893236_Hfree cholesterol in medium HDL measurement QTL GWAS893236 (human)5e-16free cholesterol in medium HDL measurement 1220796686220796687Human
407218913GWAS867889_Hcholesteryl ester measurement QTL GWAS867889 (human)8e-14blood lipid amount (VT:0003949)blood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
407247843GWAS896819_Hphosphoglycerides measurement QTL GWAS896819 (human)2e-10phospholipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
407258592GWAS907568_Hcholesteryl esters to total lipids in IDL percentage QTL GWAS907568 (human)6e-13phospholipid measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
406966503GWAS615479_Hhigh density lipoprotein cholesterol measurement QTL GWAS615479 (human)2e-08non-high density lipoprotein cholesterol measurementblood non-high density lipoprotein cholesterol level (CMO:0003967)1220796686220796687Human
407392751GWAS1041727_Hnon-high density lipoprotein cholesterol measurement QTL GWAS1041727 (human)4e-35non-high density lipoprotein cholesterol measurementblood non-high density lipoprotein cholesterol level (CMO:0003967)1220796686220796687Human
407080431GWAS729407_Hlow density lipoprotein cholesterol measurement QTL GWAS729407 (human)8e-29low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)1220796686220796687Human
407204073GWAS853049_Htotal cholesterol measurement QTL GWAS853049 (human)1e-10liver lipid amount (VT:0010764)liver fat morphological measurement (CMO:0002187)1220796686220796687Human
407090670GWAS739646_Hlow density lipoprotein cholesterol measurement QTL GWAS739646 (human)3e-33low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)1220796686220796687Human
407351530GWAS1000506_Hcholesteryl ester measurement, intermediate density lipoprotein measurement QTL GWAS1000506 (human)3e-18blood lipid amount (VT:0003949)blood total cholesterol level (CMO:0000051)1220796686220796687Human
407352297GWAS1001273_Hfree cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1001273 (human)7e-11free cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
407351031GWAS1000007_Htriglycerides:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS1000007 (human)4e-09very low density lipoprotein cholesterol measurement, phospholipids:total lipids ratioblood very low density lipoprotein cholesterol level (CMO:0000648)1220796686220796687Human
407350519GWAS999495_Htriglyceride measurement, phospholipid measurement QTL GWAS999495 (human)5e-10triglyceride measurement, phospholipid measurementblood cholesterol level (CMO:0002280)1220796686220796687Human
407218928GWAS867904_Hfree cholesterol in IDL measurement QTL GWAS867904 (human)7e-13phospholipid measurement, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)1220796686220796687Human
406941175GWAS590151_Halcohol drinking, high density lipoprotein cholesterol measurement QTL GWAS590151 (human)1e-21alcohol drinking, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
406914809GWAS563785_Hhigh density lipoprotein cholesterol measurement QTL GWAS563785 (human)7e-08high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
406959866GWAS608842_Halcohol drinking, high density lipoprotein cholesterol measurement QTL GWAS608842 (human)3e-17high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
407205765GWAS854741_Htotal phospholipids in lipoprotein particles measurement QTL GWAS854741 (human)1e-11sex hormone-binding globulin measurementblood very low density lipoprotein cholesterol level (CMO:0000648)1220796686220796687Human
407378570GWAS1027546_Hserum alanine aminotransferase measurement QTL GWAS1027546 (human)6e-57serum alanine aminotransferase measurementserum alanine aminotransferase activity level (CMO:0000575)1220796686220796687Human
407390604GWAS1039580_Hnon-high density lipoprotein cholesterol measurement QTL GWAS1039580 (human)1e-23non-high density lipoprotein cholesterol measurementblood non-high density lipoprotein cholesterol level (CMO:0003967)1220796686220796687Human
407391374GWAS1040350_Hserum alanine aminotransferase measurement QTL GWAS1040350 (human)1e-34serum alanine aminotransferase measurementserum alanine aminotransferase activity level (CMO:0000575)1220796686220796687Human
407395727GWAS1044703_Htriglyceride measurement QTL GWAS1044703 (human)5e-25triglyceride measurementblood triglyceride level (CMO:0000118)1220796686220796687Human
407151242GWAS800218_Hserum alanine aminotransferase measurement QTL GWAS800218 (human)1e-31serum alanine aminotransferase measurementserum alanine aminotransferase activity level (CMO:0000575)1220796686220796687Human
407391896GWAS1040872_Hserum alanine aminotransferase measurement QTL GWAS1040872 (human)3e-62serum alanine aminotransferase measurementserum alanine aminotransferase activity level (CMO:0000575)1220796686220796687Human
407350674GWAS999650_Hfree cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS999650 (human)3e-12phospholipids:total lipids ratio, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)1220796686220796687Human
407351195GWAS1000171_Hserum alanine aminotransferase measurement QTL GWAS1000171 (human)9e-50serum alanine aminotransferase measurementserum alanine aminotransferase activity level (CMO:0000575)1220796686220796687Human
407352729GWAS1001705_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1001705 (human)8e-15total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
407399081GWAS1048057_Hhigh density lipoprotein cholesterol measurement QTL GWAS1048057 (human)1e-42high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
407350949GWAS999925_Halkaline phosphatase measurement QTL GWAS999925 (human)6e-09alkaline phosphatase measurementblood alkaline phosphatase activity level (CMO:0000576)1220796686220796687Human
407353252GWAS1002228_Hcholine measurement QTL GWAS1002228 (human)6e-14choline measurement1220796686220796687Human
407353261GWAS1002237_Hphospholipid measurement, high density lipoprotein cholesterol measurement QTL GWAS1002237 (human)2e-18phospholipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
406970284GWAS619260_Hhigh density lipoprotein cholesterol measurement QTL GWAS619260 (human)6e-11high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
407256502GWAS905478_Hsaturated fatty acids to total fatty acids percentage QTL GWAS905478 (human)4e-21saturated fatty acids to total fatty acids percentage 1220796686220796687Human
407212214GWAS861190_Hhigh density lipoprotein cholesterol measurement QTL GWAS861190 (human)4e-14blood lipid amount (VT:0003949)blood lipoprotein measurement (CMO:0002690)1220796686220796687Human
407353522GWAS1002498_Hlipid measurement, intermediate density lipoprotein measurement QTL GWAS1002498 (human)1e-15phospholipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
406958004GWAS606980_Hlow density lipoprotein cholesterol measurement, alcohol consumption measurement QTL GWAS606980 (human)3e-15high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
407286704GWAS935680_Hlow density lipoprotein cholesterol measurement QTL GWAS935680 (human)7e-16low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)1220796686220796687Human
407182521GWAS831497_Htriglyceride measurement QTL GWAS831497 (human)5e-17triglyceride measurementblood triglyceride level (CMO:0000118)1220796686220796687Human
407353528GWAS1002504_Hphospholipid measurement, high density lipoprotein cholesterol measurement QTL GWAS1002504 (human)9e-17phospholipid measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)1220796686220796687Human
406971326GWAS620302_Hlow density lipoprotein cholesterol measurement, alcohol drinking QTL GWAS620302 (human)0.000007low density lipoprotein cholesterol measurement, alcohol drinkingblood low density lipoprotein cholesterol level (CMO:0000053)1220796686220796687Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS540060_H GCST004235 Total cholesterol levels 32,576 East Asian ancestry individuals, 187,365 European ancestry individuals A 0.178 0.000005 5.302 rs2642438 0.0526 total cholesterol measurement (EFO:0004574)
 PMID:28334899
GWAS540204_H GCST004235 Total cholesterol levels 32,576 East Asian ancestry individuals, 187,365 European ancestry individuals A 0.255 1E-22 22 rs2642438 0.037 total cholesterol measurement (EFO:0004574)
 PMID:28334899
GWAS559240_H GCST007143 Total cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals A 0.293 3E-16 15.523 rs2642438 0.041 total cholesterol measurement (EFO:0004574)
 PMID:29507422
GWAS559248_H GCST007143 Total cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals A NR 4E-20 19.398 rs2642438 0.042 total cholesterol measurement (EFO:0004574)
 PMID:29507422
GWAS563648_H GCST007140 High density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals A 0.293 5E-7 6.302 rs2642438 0.021 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:29507422
GWAS563785_H GCST007140 High density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals A NR 7E-8 7.155 rs2642438 0.02 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:29507422
GWAS566041_H GCST007141 Low density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals A 0.293 1E-19 19 rs2642438 0.047 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:29507422
GWAS566043_H GCST007141 Low density lipoprotein cholesterol levels 76,627 European ancestry individuals, 7,795 Hispanic individuals, 6,855 East Asian ancestry individuals, 2,958 African American individuals, 439 South Asian ancestry individuals A NR 9E-24 23.046 rs2642438 0.047 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:29507422
None Available GCST004233 LDL cholesterol levels 32,285 East Asian ancestry individuals, 173,082 European ancestry individuals A 0.255 1E-19 19 rs2642438 0.0352 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:28334899
GWAS590151_H GCST008084 HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df) 56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers G NR 1E-21 21 rs2642438 N/A alcohol drinking (EFO:0004329)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS598870_H GCST008087 Triglyceride levels in current drinkers 56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals G NR 0.000002 5.699 rs2642438 0.01 triglyceride measurement (EFO:0004530)
 PMID:30698716
GWAS601945_H GCST008075 HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df) 44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers G NR 8E-18 17.097 rs2642438 N/A alcohol consumption measurement (EFO:0007878)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS605384_H GCST008086 LDL cholesterol levels in current drinkers 56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals G NR 2E-12 11.699 rs2642438 1.155 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:30698716
GWAS606980_H GCST008078 LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df) 44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers G NR 3E-15 14.523 rs2642438 N/A low density lipoprotein cholesterol measurement (EFO:0004611)
alcohol consumption measurement (EFO:0007878)
 PMID:30698716
GWAS607332_H GCST008074 Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df) 44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers G NR 3E-7 6.523 rs2642438 N/A triglyceride measurement (EFO:0004530)
alcohol consumption measurement (EFO:0007878)
 PMID:30698716
GWAS608842_H GCST008084 HDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df) 56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers G NR 3E-17 16.523 rs2642438 N/A alcohol drinking (EFO:0004329)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS610191_H GCST008075 HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df) 44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers G NR 2E-13 12.699 rs2642438 N/A alcohol consumption measurement (EFO:0007878)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS611617_H GCST008075 HDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df) 44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers G NR 0.000009 5.046 rs2642438 N/A alcohol consumption measurement (EFO:0007878)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS615479_H GCST008085 HDL cholesterol levels in current drinkers 56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals G NR 2E-8 7.699 rs2642438 0.007 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS615827_H GCST008078 LDL cholesterol levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df) 44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers G NR 6E-22 21.222 rs2642438 N/A low density lipoprotein cholesterol measurement (EFO:0004611)
alcohol consumption measurement (EFO:0007878)
 PMID:30698716
GWAS616992_H GCST008077 LDL cholesterol levels 89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals G NR 5E-8 7.302 rs2642438 1.113 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:30698716
GWAS618939_H GCST008079 LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df) 56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers G NR 7E-15 14.155 rs2642438 N/A low density lipoprotein cholesterol measurement (EFO:0004611)
alcohol drinking (EFO:0004329)
 PMID:30698716
GWAS619260_H GCST008085 HDL cholesterol levels in current drinkers 56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals G NR 6E-11 10.222 rs2642438 0.006 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS620182_H GCST008079 LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df) 56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers G NR 2E-22 21.699 rs2642438 N/A low density lipoprotein cholesterol measurement (EFO:0004611)
alcohol drinking (EFO:0004329)
 PMID:30698716
GWAS620302_H GCST008079 LDL cholesterol levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df) 56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers G NR 0.000007 5.155 rs2642438 N/A low density lipoprotein cholesterol measurement (EFO:0004611)
alcohol drinking (EFO:0004329)
 PMID:30698716
GWAS621182_H GCST008074 Triglyceride levels x alcohol consumption (regular vs non-regular drinkers) interaction (2df) 44,831 European ancestry regular drinkers, 3,976 African American regular drinkers, 1,288 Asian ancestry regular drinkers, 827 Hispanic regular drinkers, 11,674 European ancestry non-regular drinkers, 5,894 African American non-regular drinkers, 1,203 Asian ancestry non-regular drinkers, 1,701 Hispanic non-regular drinkers G NR 7E-9 8.155 rs2642438 N/A triglyceride measurement (EFO:0004530)
alcohol consumption measurement (EFO:0007878)
 PMID:30698716
None Available GCST008070 HDL cholesterol levels 89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals G NR 3E-7 6.523 rs2642438 0.009605 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
GWAS627148_H GCST008083 Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df) 56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers G NR 3E-10 9.523 rs2642438 N/A triglyceride measurement (EFO:0004530)
alcohol drinking (EFO:0004329)
 PMID:30698716
GWAS627224_H GCST008083 Triglyceride levels x alcohol consumption (drinkers vs non-drinkers) interaction (2df) 56,505 European ancestry current drinkers, 9,870 African American current drinkers, 2,491 Asian ancestry current drinkers, 2,528 Hispanic current drinkers, 33,388 European ancestry non-drinkers, 11,119 African American non-drinkers, 9,959 Asian ancestry non-drinkers, 1,466 Hispanic non-drinkers G NR 6E-7 6.222 rs2642438 N/A triglyceride measurement (EFO:0004530)
alcohol drinking (EFO:0004329)
 PMID:30698716
GWAS627861_H GCST008086 LDL cholesterol levels in current drinkers 56,505 European ancestry individuals, 9,870 African American individuals, 2,491 Asian ancestry individuals, 2,528 Hispanic individuals G NR 1E-8 8 rs2642438 1.1 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:30698716
GWAS628868_H GCST008070 HDL cholesterol levels 89,893 European ancestry individuals, 20,989 African American individuals, 12,450 Asian ancestry individuals, 3,994 HIspanic individuals G NR 5E-9 8.302 rs2642438 0.007064 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30698716
None Available GCST006016 Serum alkaline phosphatase levels 105,030 Japanese ancestry individuals ? NR 2E-8 7.699 rs2642438 0.03299 alkaline phosphatase measurement (EFO:0004533)
 PMID:29403010
GWAS729407_H GCST010245 LDL cholesterol levels 440,546 European ancestry individuals A 0.297344 8E-29 28.097 rs2642438 0.0253446 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:32203549
GWAS736166_H GCST010241 Apolipoprotein A1 levels 393,193 European ancestry individuals A 0.297377 4E-42 41.398 rs2642438 0.0291299 apolipoprotein A 1 measurement (EFO:0004614)
 PMID:32203549
GWAS739475_H GCST010242 HDL cholesterol levels 403,943 European ancestry individuals A 0.297302 2E-40 39.699 rs2642438 0.027676 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:32203549
GWAS739646_H GCST010204 Low density lipoprotein cholesterol levels 324,708 British ancestry individuals ? NR 3E-33 32.523 rs2642438 0.0332 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:32154731
GWAS794783_H GCST90011885 Nonalcoholic fatty liver disease 1,483 European ancestry cases, 17,781 European ancestry controls ? NR 0.000006 5.222 rs2642438 1.2239902 non-alcoholic fatty liver disease (EFO:0003095)
 PMID:32298765
GWAS800218_H GCST90011898 Alanine aminotransferase levels 390,812 European ancestry individuals G 0.7 1E-31 31 rs2642438 11.7 serum alanine aminotransferase measurement (EFO:0004735)
 PMID:33547301
GWAS802485_H GCST90011900 Serum alkaline phosphatase levels 390,964 European ancestry individuals G 0.7 9E-34 33.046 rs2642438 12.1 alkaline phosphatase measurement (EFO:0004533)
 PMID:33547301
None Available GCST90444487 Metabolic syndrome 1,384,348 European ancestry individuals ? NR 2E-17 16.699 rs2642438 0.0153834 metabolic syndrome (EFO:0000195)
 PMID:39349817
GWAS827015_H GCST90239655 Low density lipoprotein cholesterol levels 40,963 South Asian ancestry individuals, 48,057 Hispanic individuals, 99,432 Admixed African or African ancestry individuals, 146,492 East Asian ancestry individuals, 1,320,016 European ancestry individuals ? NR 1E-81 81 rs2642438 N/A low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34887591
GWAS831497_H GCST90239664 Triglyceride levels 1,320,016 European ancestry individuals G 0.705743 5E-17 16.302 rs2642438 0.0157453 triglyceride measurement (EFO:0004530)
 PMID:34887591
None Available GCST90269503 HDL cholesterol levels (UKB data field 23406) 88,329 European ancestry individuals A 0.296273 3E-15 14.523 rs2642438 0.0368881 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:36764567
GWAS853049_H GCST90269497 Total cholesterol levels (UKB data field 23400) 88,329 European ancestry individuals A 0.296273 1E-10 10 rs2642438 0.0322443 total cholesterol measurement (EFO:0004574)
 PMID:36764567
GWAS854741_H GCST90269508 Total phospholipids in lipoprotein particles (UKB data field 23411) 88,329 European ancestry individuals A 0.296273 1E-11 11 rs2642438 0.0333492 total phospholipids in lipoprotein particles measurement (EFO:0022315)
 PMID:36764567
GWAS861190_H GCST90269527 Concentration of HDL particles (UKB data field 23430) 88,329 European ancestry individuals A 0.296273 4E-14 13.398 rs2642438 0.0368444 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:36764567
GWAS862741_H GCST90269537 Apolipoprotein A1 levels (UKB data field 23440) 88,329 European ancestry individuals A 0.296273 5E-15 14.302 rs2642438 0.0372709 apolipoprotein A 1 measurement (EFO:0004614)
 PMID:36764567
None Available GCST90269655 Concentration of large HDL particles (UKB data field 23558) 88,329 European ancestry individuals A 0.296273 1E-11 11 rs2642438 0.0312744 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:36764567
GWAS865906_H GCST90269657 Phospholipids in large HDL (UKB data field 23560) 88,329 European ancestry individuals A 0.296273 4E-13 12.398 rs2642438 0.0335545 phospholipids in large HDL measurement (EFO:0022190)
 PMID:36764567
None Available GCST90269656 Total lipids in large HDL (UKB data field 23559) 88,329 European ancestry individuals A 0.296273 2E-12 11.699 rs2642438 0.032583 total lipids in large HDL (EFO:0022189)
 PMID:36764567
GWAS866462_H GCST90271622 Nonalcoholic fatty liver disease 691,479 European ancestry, African American or Afro-Caribbean, East Asian ancestry, Hispanic or Latin American, South Asian ancestry individuals G 0.72 6E-15 14.222 rs2642438 7.8 non-alcoholic fatty liver disease (EFO:0003095)
 PMID:37709864
GWAS866719_H GCST90269623 Cholesterol in IDL (UKB data field 23526) 88,329 European ancestry individuals A 0.296273 1E-13 13 rs2642438 0.0373707 cholesterol in IDL measurement (EFO:0021899)
 PMID:36764567
GWAS867889_H GCST90269624 Cholesteryl esters in IDL (UKB data field 23527) 88,329 European ancestry individuals A 0.296273 8E-14 13.097 rs2642438 0.0374848 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
GWAS867904_H GCST90269625 Free cholesterol in IDL (UKB data field 23528) 88,329 European ancestry individuals A 0.296273 7E-13 12.155 rs2642438 0.0361491 free cholesterol in IDL measurement (EFO:0022181)
 PMID:36764567
None Available GCST90269512 Total esterified cholesterol levels (UKB data field 23415) 88,329 European ancestry individuals A 0.296273 1E-11 11 rs2642438 0.0338252 esterified cholesterol measurement (EFO:0008589)
 PMID:36764567
None Available GCST90269511 Phospholipids in HDL (UKB data field 23414) 88,329 European ancestry individuals A 0.296273 3E-15 14.523 rs2642438 0.0371869 phospholipids in HDL measurement (EFO:0022293)
 PMID:36764567
GWAS871517_H GCST90269515 Cholesteryl esters in HDL (UKB data field 23418) 88,329 European ancestry individuals A 0.296273 1E-14 14 rs2642438 0.0361871 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
GWAS876746_H GCST90269739 Free cholesterol to total lipids in medium HDL percentage (UKB data field 23642) 88,329 European ancestry individuals A 0.296273 4E-15 14.398 rs2642438 0.0365437 free cholesterol to total lipids in medium HDL percentage (EFO:0022282)
 PMID:36764567
GWAS881710_H GCST90269524 Total concentration of lipoprotein particles (UKB data field 23427) 88,329 European ancestry individuals A 0.296273 2E-14 13.699 rs2642438 0.0373089 lipoprotein measurement (EFO:0004732)
 PMID:36764567
GWAS882617_H GCST90269523 Total lipids in HDL (UKB data field 23426) 88,329 European ancestry individuals A 0.296273 2E-15 14.699 rs2642438 0.0371639 total lipids in HDL measurement (EFO:0022307)
 PMID:36764567
GWAS890771_H GCST90269660 Free cholesterol in large HDL (UKB data field 23563) 88,329 European ancestry individuals A 0.296273 1E-12 12 rs2642438 0.0326951 free cholesterol in large HDL measurement (EFO:0022157)
 PMID:36764567
None Available GCST90269659 Cholesteryl esters in large HDL (UKB data field 23562) 88,329 European ancestry individuals A 0.296273 1E-10 10 rs2642438 0.0298545 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
GWAS893236_H GCST90269667 Free cholesterol in medium HDL (UKB data field 23570) 88,329 European ancestry individuals A 0.296273 5E-16 15.302 rs2642438 0.0384509 free cholesterol in medium HDL measurement (EFO:0022267)
 PMID:36764567
GWAS896819_H GCST90269531 Phosphoglycerides levels (UKB data field 23434) 88,268 European ancestry individuals A 0.29628 2E-10 9.699 rs2642438 0.0311371 phosphoglycerides measurement (EFO:0022291)
 PMID:36764567
GWAS899267_H GCST90269621 Total lipids in IDL (UKB data field 23524) 88,329 European ancestry individuals A 0.296273 9E-12 11.046 rs2642438 0.0342801 total lipids in IDL (EFO:0022161)
 PMID:36764567
None Available GCST90269662 Concentration of medium HDL particles (UKB data field 23565) 88,329 European ancestry individuals A 0.296273 1E-14 14 rs2642438 0.0369762 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:36764567
None Available GCST90269663 Total lipids in medium HDL (UKB data field 23566) 88,329 European ancestry individuals A 0.296273 4E-14 13.398 rs2642438 0.0363878 total lipids in medium HDL measurement (EFO:0022310)
 PMID:36764567
None Available GCST90269665 Cholesterol in medium HDL (UKB data field 23568) 88,329 European ancestry individuals A 0.296273 1E-14 14 rs2642438 0.0370246 cholesterol in medium HDL measurement (EFO:0021903)
 PMID:36764567
None Available GCST90269666 Cholesteryl esters in medium HDL (UKB data field 23569) 88,329 European ancestry individuals A 0.296273 4E-14 13.398 rs2642438 0.036412 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
GWAS904839_H GCST90269658 Cholesterol in large HDL (UKB data field 23561) 88,329 European ancestry individuals A 0.296273 4E-11 10.398 rs2642438 0.0306396 cholesterol in large HDL measurement (EFO:0021900)
 PMID:36764567
None Available GCST90269535 Sphingomyelins levels (UKB data field 23438) 88,268 European ancestry individuals A 0.29628 1E-14 14 rs2642438 0.0375587 sphingomyelin measurement (EFO:0010118)
 PMID:36764567
GWAS905478_H GCST90269552 Saturated fatty acids to total fatty acids percentage (UKB data field 23455) 88,268 European ancestry individuals A 0.29628 4E-21 20.398 rs2642438 0.0479218 saturated fatty acids to total fatty acids percentage (EFO:0022305)
 PMID:36764567
None Available GCST90269519 Free cholesterol in HDL (UKB data field 23422) 88,329 European ancestry individuals A 0.296273 3E-16 15.523 rs2642438 0.0378497 free cholesterol in HDL measurement (EFO:0022264)
 PMID:36764567
None Available GCST90269533 Total cholines levels (UKB data field 23436) 88,268 European ancestry individuals A 0.29628 1E-11 11 rs2642438 0.0328687 choline measurement (EFO:0010116)
 PMID:36764567
GWAS906334_H GCST90269534 Phosphatidylcholines levels (UKB data field 23437) 88,268 European ancestry individuals A 0.29628 3E-11 10.523 rs2642438 0.0321773 phosphatidylcholine measurement (EFO:0010226)
 PMID:36764567
GWAS907568_H GCST90269708 Cholesteryl esters to total lipids in IDL percentage (UKB data field 23611) 88,329 European ancestry individuals A 0.296273 6E-13 12.222 rs2642438 0.0363537 cholesteryl esters to total lipids in IDL percentage (EFO:0022247)
 PMID:36764567
None Available GCST90269703 Cholesteryl esters to total lipids in very small VLDL percentage (UKB data field 23606) 88,329 European ancestry individuals A 0.296273 3E-17 16.523 rs2642438 0.0413986 cholesteryl esters to total lipids in very small VLDL percentage (EFO:0022259)
 PMID:36764567
GWAS907964_H GCST90269701 Phospholipids to total lipids in very small VLDL percentage (UKB data field 23604) 88,329 European ancestry individuals A 0.296273 1E-16 16 rs2642438 0.0417541 phospholipids:total lipids ratio (EFO:0020946)
 PMID:36764567
GWAS908407_H GCST90239821 Sex hormone-binding globulin levels 163,363 British ancestry men ? NR 1E-30 30 rs2642438 0.0396698 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:36653534
None Available GCST90269710 Triglycerides to total lipids in IDL percentage (UKB data field 23613) 88,329 European ancestry individuals A 0.296273 2E-12 11.699 rs2642438 0.0352899 triglycerides to total lipids in IDL percentage (EFO:0022329)
 PMID:36764567
None Available GCST90269714 Free cholesterol to total lipids in large LDL percentage (UKB data field 23617) 88,329 European ancestry individuals A 0.296273 3E-11 10.523 rs2642438 0.033001 free cholesterol to total lipids in large LDL percentage (EFO:0022280)
 PMID:36764567
None Available GCST90269702 Cholesterol to total lipids in very small VLDL percentage (UKB data field 23605) 88,329 European ancestry individuals A 0.296273 1E-16 16 rs2642438 0.0407566 cholesterol to total lipids in very small VLDL percentage (EFO:0022245)
 PMID:36764567
None Available GCST90269707 Cholesterol to total lipids in IDL percentage (UKB data field 23610) 88,329 European ancestry individuals A 0.296273 2E-14 13.699 rs2642438 0.0387198 cholesterol to total lipids in IDL percentage (EFO:0022233)
 PMID:36764567
None Available GCST90269705 Triglycerides to total lipids in very small VLDL percentage (UKB data field 23608) 88,329 European ancestry individuals A 0.296273 1E-13 13 rs2642438 0.0366158 triglycerides to total lipids in very small VLDL percentage (EFO:0022341)
 PMID:36764567
GWAS935680_H GCST006612 LDL cholesterol 215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals A 0.2713 7E-16 15.155 rs2642438 0.0248 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:30275531
None Available GCST006611 HDL cholesterol 215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals A 0.2715 6E-13 12.222 rs2642438 0.0224 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:30275531
GWAS977973_H GCST011348 High density lipoprotein cholesterol levels 76,081 European ancestry individuals, 127,395 Japanese ancestry individuals ? NR 4E-8 7.398 rs2642438 0.0282 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:33339817
GWAS981960_H GCST011586 Cirrhosis (multi-trait analysis) 4,829 European, African, Asian and unknown ancestry cases, 72,705 European, African, Asian and unknown ancestry controls, 362,539 European, African, Asian and unknown ancestry individuals with ALT measurements A 0.29 1E-43 43 rs2642438 N/A cirrhosis of liver (EFO:0001422)
 PMID:33310085
GWAS983212_H GCST011346 Total cholesterol levels 76,081 European ancestry individuals, 127,395 Japanese ancestry individuals ? NR 7E-10 9.155 rs2642438 0.0266 total cholesterol measurement (EFO:0004574)
 PMID:33339817
GWAS996004_H GCST90129602 Chronic elevation of alanine aminotransferase (cALT) levels 95,472 European ancestry cases, 68,725 European ancestry controls A 0.295 8E-23 22.097 rs2642438 0.079 serum alanine aminotransferase measurement (EFO:0004735)
 PMID:35654975
GWAS998256_H GCST90129601 Chronic elevation of alanine aminotransferase (cALT) levels 95,472 European ancestry cases, 68,725 European ancestry controls, 23,977 African American cases, 13,387 African American controls, 7,650 Hispanic cases, 7,468 Hispanic controls, 1,088 Asian ancestry cases, 828 Asian ancestry controls A 0.274 7E-24 23.155 rs2642438 0.075 serum alanine aminotransferase measurement (EFO:0004735)
 PMID:35654975
GWAS999495_H GCST90092983 Ratio of triglycerides to phosphoglycerides 115,006 European ancestry individuals A 0.296172 5E-10 9.302 rs2642438 0.0260348 triglyceride measurement (EFO:0004530)
phospholipid measurement (EFO:0004639)
 PMID:35213538
None Available GCST90092986 Total esterified cholesterol levels 115,082 European ancestry individuals A 0.29615 2E-14 13.699 rs2642438 0.0334873 esterified cholesterol measurement (EFO:0008589)
 PMID:35213538
GWAS999630_H GCST90092985 Total cholesterol levels 115,082 European ancestry individuals A 0.29615 3E-13 12.523 rs2642438 0.0319488 total cholesterol measurement (EFO:0004574)
 PMID:35213538
GWAS999650_H GCST90092860 Free cholesterol levels in large LDL 115,082 European ancestry individuals A 0.29615 3E-12 11.523 rs2642438 0.0310718 free cholesterol measurement (EFO:0008591)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS999707_H GCST90092948 Free cholesterol levels in small HDL 115,082 European ancestry individuals A 0.29615 2E-9 8.699 rs2642438 0.0267254 free cholesterol measurement (EFO:0008591)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
None Available GCST90092899 Concentration of medium HDL particles 115,082 European ancestry individuals A 0.29615 3E-17 16.523 rs2642438 0.0350811 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS999803_H GCST90092982 Sphingomyelin levels 115,006 European ancestry individuals A 0.296172 7E-20 19.155 rs2642438 0.0385544 sphingomyelin measurement (EFO:0010118)
 PMID:35213538
GWAS999808_H GCST90092981 Ratio of saturated fatty acids to total fatty acids 115,006 European ancestry individuals A 0.296172 2E-25 24.699 rs2642438 0.0465484 fatty acid measurement (EFO:0005110)
 PMID:35213538
GWAS999925_H GCST90018722 Serum alkaline phosphatase levels 118,886 East Asian ancestry individuals G 0.81862 6E-9 8.222 rs2642438 0.0293833 alkaline phosphatase measurement (EFO:0004533)
 PMID:34594039
GWAS1000007_H GCST90092955 Triglycerides to total lipids ratio in small HDL 115,082 European ancestry individuals A 0.29615 4E-9 8.398 rs2642438 0.025145 triglycerides:total lipids ratio (EFO:0020947)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1000023_H GCST90092917 Cholesterol to total lipids ratio in medium VLDL 115,082 European ancestry individuals A 0.29615 9E-10 9.046 rs2642438 0.0259964 very low density lipoprotein cholesterol measurement (EFO:0008317)
cholesterol:total lipids ratio (EFO:0020943)
 PMID:35213538
None Available GCST90092927 Triglycerides to total lipids ratio in medium VLDL 115,082 European ancestry individuals A 0.29615 7E-10 9.155 rs2642438 0.0263065 triglycerides:total lipids ratio (EFO:0020947)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90092967 Triglycerides to total lipids ratio in small LDL 115,082 European ancestry individuals A 0.29615 2E-8 7.699 rs2642438 0.0245049 triglycerides:total lipids ratio (EFO:0020947)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1000108_H GCST90093029 Cholesterol to total lipids ratio in very small VLDL 115,082 European ancestry individuals A 0.29615 5E-23 22.302 rs2642438 0.0421483 very low density lipoprotein cholesterol measurement (EFO:0008317)
cholesterol:total lipids ratio (EFO:0020943)
 PMID:35213538
None Available GCST90093031 Cholesteryl esters to total lipids ratio in very small VLDL 115,082 European ancestry individuals A 0.29615 7E-24 23.155 rs2642438 0.0427105 very low density lipoprotein cholesterol measurement (EFO:0008317)
cholesteryl esters:total lipids ratio (EFO:0020944)
 PMID:35213538
GWAS1000171_H GCST90013663 Alanine aminotransferase levels 387,859 British ancestry individuals, 10,635 Asian or Asian British individuals, 7,468 Black or Black British individuals, 2,338 Chinese ancestry individuals ? NR 9E-50 49.046 rs2642438 0.0065 serum alanine aminotransferase measurement (EFO:0004735)
 PMID:34315874
GWAS1000222_H GCST90092826 Concentration of HDL particles 115,082 European ancestry individuals A 0.29615 2E-16 15.699 rs2642438 0.0349061 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1000223_H GCST90092825 Total lipid levels in HDL 115,082 European ancestry individuals A 0.29615 1E-18 18 rs2642438 0.0357103 lipid measurement (EFO:0004529)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
None Available GCST90092834 Cholesteryl esters to total lipids ratio in IDL 115,082 European ancestry individuals A 0.29615 2E-16 15.699 rs2642438 0.0362403 cholesteryl esters:total lipids ratio (EFO:0020944)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
None Available GCST90092851 Concentration of large HDL particles 115,082 European ancestry individuals A 0.29615 3E-15 14.523 rs2642438 0.0312681 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
None Available GCST90013664 Aspartate aminotransferase levels 386,570 British ancestry individuals, 10,617 Asian or Asian British individuals, 7,426 Black or Black British individuals, 2,321 Chinese ancestry individuals ? NR 1E-12 12 rs2642438 0.0019 aspartate aminotransferase measurement (EFO:0004736)
 PMID:34315874
GWAS1000477_H GCST90092892 Cholesterol levels in medium HDL 115,082 European ancestry individuals A 0.29615 2E-17 16.699 rs2642438 0.0352884 total cholesterol measurement (EFO:0004574)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
None Available GCST90092823 Cholesteryl ester levels in HDL 115,082 European ancestry individuals A 0.29615 8E-18 17.097 rs2642438 0.0349338 cholesteryl ester measurement (EFO:0010351)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
None Available GCST90092832 Cholesterol to total lipids ratio in IDL 115,082 European ancestry individuals A 0.29615 1E-19 19 rs2642438 0.0398211 cholesterol:total lipids ratio (EFO:0020943)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS1000506_H GCST90092833 Cholesteryl ester levels in IDL 115,082 European ancestry individuals A 0.29615 3E-18 17.523 rs2642438 0.038139 cholesteryl ester measurement (EFO:0010351)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
None Available GCST90092991 Total phospholipid levels in lipoprotein particles 115,082 European ancestry individuals A 0.29615 4E-14 13.398 rs2642438 0.0324889 lipoprotein measurement (EFO:0004732)
phospholipid measurement (EFO:0004639)
 PMID:35213538
GWAS1000749_H GCST90093010 Total lipid levels in very large HDL 115,082 European ancestry individuals A 0.29615 5E-11 10.302 rs2642438 0.0267361 lipid measurement (EFO:0004529)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1000810_H GCST90092846 Cholesteryl ester levels in large HDL 115,082 European ancestry individuals A 0.29615 5E-14 13.302 rs2642438 0.0301325 cholesteryl ester measurement (EFO:0010351)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1000977_H GCST90092990 Total concentration of lipoprotein particles 115,082 European ancestry individuals A 0.29615 6E-17 16.222 rs2642438 0.0355755 lipoprotein measurement (EFO:0004732)
 PMID:35213538
None Available GCST90093004 Cholesterol levels in very large HDL 115,082 European ancestry individuals A 0.29615 1E-11 11 rs2642438 0.0277686 total cholesterol measurement (EFO:0004574)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1000997_H GCST90093030 Cholesteryl ester levels in very small VLDL 115,082 European ancestry individuals A 0.29615 3E-14 13.523 rs2642438 0.0332055 cholesteryl ester measurement (EFO:0010351)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS1001099_H GCST90092849 Free cholesterol to total lipids ratio in large HDL 115,082 European ancestry individuals A 0.29615 2E-11 10.699 rs2642438 0.0281087 free cholesterol:total lipids ratio (EFO:0020945)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
None Available GCST90092850 Total lipid levels in large HDL 115,082 European ancestry individuals A 0.29615 3E-16 15.523 rs2642438 0.0323664 lipid measurement (EFO:0004529)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
None Available GCST90092856 Cholesterol levels in large LDL 115,082 European ancestry individuals A 0.29615 2E-8 7.699 rs2642438 0.0251106 total cholesterol measurement (EFO:0004574)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092937 Phosphatidylcholine levels 115,006 European ancestry individuals A 0.296172 6E-13 12.222 rs2642438 0.030394 phospholipid measurement (EFO:0004639)
 PMID:35213538
None Available GCST90092925 Phospholipids to total lipids ratio in medium VLDL 115,082 European ancestry individuals A 0.29615 4E-9 8.398 rs2642438 0.0254974 very low density lipoprotein cholesterol measurement (EFO:0008317)
phospholipids:total lipids ratio (EFO:0020946)
 PMID:35213538
GWAS1001273_H GCST90093008 Free cholesterol levels in very large HDL 115,082 European ancestry individuals A 0.29615 7E-11 10.155 rs2642438 0.0274731 free cholesterol measurement (EFO:0008591)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
None Available GCST90093012 Phospholipid levels in very large HDL 115,082 European ancestry individuals A 0.29615 2E-10 9.699 rs2642438 0.0259341 phospholipid measurement (EFO:0004639)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
None Available GCST90092938 Phosphoglycerides levels 115,006 European ancestry individuals A 0.296172 2E-12 11.699 rs2642438 0.0300293 phospholipid measurement (EFO:0004639)
 PMID:35213538
GWAS1001517_H GCST90092885 Free cholesterol levels in LDL 115,082 European ancestry individuals A 0.29615 1E-9 9 rs2642438 0.0273623 free cholesterol measurement (EFO:0008591)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90093028 Cholesterol levels in very small VLDL 115,082 European ancestry individuals A 0.29615 1E-11 11 rs2642438 0.0297348 total cholesterol measurement (EFO:0004574)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90093011 Concentration of very large HDL particles 115,082 European ancestry individuals A 0.29615 1E-10 10 rs2642438 0.0261445 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
None Available GCST90092862 Total lipid levels in large LDL 115,082 European ancestry individuals A 0.29615 4E-8 7.398 rs2642438 0.0245558 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:35213538
None Available GCST90092861 Free cholesterol to total lipids ratio in large LDL 115,082 European ancestry individuals A 0.29615 3E-16 15.523 rs2642438 0.0351201 low density lipoprotein cholesterol measurement (EFO:0004611)
free cholesterol:total lipids ratio (EFO:0020945)
 PMID:35213538
None Available GCST90092842 Triglycerides to total lipids ratio in IDL 115,082 European ancestry individuals A 0.29615 1E-16 16 rs2642438 0.0359845 triglycerides:total lipids ratio (EFO:0020947)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS1001705_H GCST90092844 Cholesterol levels in large HDL 115,082 European ancestry individuals A 0.29615 8E-15 14.097 rs2642438 0.0309521 total cholesterol measurement (EFO:0004574)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1001872_H GCST90093039 Triglycerides to total lipids ratio in very small VLDL 115,082 European ancestry individuals A 0.29615 4E-19 18.398 rs2642438 0.0381972 triglycerides:total lipids ratio (EFO:0020947)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS1002228_H GCST90092812 Total cholines levels 115,006 European ancestry individuals A 0.296172 6E-14 13.222 rs2642438 0.0318852 choline measurement (EFO:0010116)
 PMID:35213538
None Available GCST90092828 Average diameter for HDL particles 115,082 European ancestry individuals A 0.29615 2E-11 10.699 rs2642438 0.0268146 high density lipoprotein particle size measurement (EFO:0008592)
 PMID:35213538
GWAS1002237_H GCST90092827 Phospholipid levels in HDL 115,082 European ancestry individuals A 0.29615 2E-18 17.699 rs2642438 0.035642 phospholipid measurement (EFO:0004639)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1002324_H GCST90092896 Free cholesterol levels in medium HDL 115,082 European ancestry individuals A 0.29615 3E-19 18.523 rs2642438 0.036829 free cholesterol measurement (EFO:0008591)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1002498_H GCST90092837 Total lipid levels in IDL 115,082 European ancestry individuals A 0.29615 1E-15 15 rs2642438 0.0350904 lipid measurement (EFO:0004529)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS1002504_H GCST90092852 Phospholipid levels in large HDL 115,082 European ancestry individuals A 0.29615 9E-17 16.046 rs2642438 0.0330618 phospholipid measurement (EFO:0004639)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1002592_H GCST90092905 Cholesterol to total lipids ratio in medium LDL 115,082 European ancestry individuals A 0.29615 8E-11 10.097 rs2642438 0.029466 cholesterol:total lipids ratio (EFO:0020943)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS1002644_H GCST90093037 Phospholipids to total lipids ratio in very small VLDL 115,082 European ancestry individuals A 0.29615 8E-21 20.097 rs2642438 0.0412679 very low density lipoprotein cholesterol measurement (EFO:0008317)
phospholipids:total lipids ratio (EFO:0020946)
 PMID:35213538
None Available GCST90092864 Phospholipid levels in large LDL 115,082 European ancestry individuals A 0.29615 1E-9 9 rs2642438 0.0272306 low density lipoprotein cholesterol measurement (EFO:0004611)
phospholipid measurement (EFO:0004639)
 PMID:35213538
None Available GCST90092894 Cholesteryl ester levels in medium HDL 115,082 European ancestry individuals A 0.29615 1E-16 16 rs2642438 0.0346635 cholesteryl ester measurement (EFO:0010351)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
None Available GCST90295950 Triglyceride to HDL cholesterol ratio 185,749 European ancestry individuals A 0.2982 1E-9 9 rs2642438 0.0253 triglyceride:HDL cholesterol ratio (EFO:0007929)
 PMID:38200128
None Available GCST90092867 Triglycerides to total lipids ratio in large LDL 115,082 European ancestry individuals A 0.29615 3E-10 9.523 rs2642438 0.0277597 triglycerides:total lipids ratio (EFO:0020947)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092973 Free cholesterol to total lipids ratio in small VLDL 115,082 European ancestry individuals A 0.29615 2E-13 12.699 rs2642438 0.03154 very low density lipoprotein cholesterol measurement (EFO:0008317)
free cholesterol:total lipids ratio (EFO:0020945)
 PMID:35213538
None Available GCST90092988 Total free cholesterol levels 115,082 European ancestry individuals A 0.29615 5E-10 9.302 rs2642438 0.0274612 free cholesterol measurement (EFO:0008591)
 PMID:35213538
None Available GCST90092898 Total lipid levels in medium HDL 115,082 European ancestry individuals A 0.29615 2E-16 15.699 rs2642438 0.034549 lipid measurement (EFO:0004529)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
None Available GCST90092919 Cholesteryl esters to total lipids ratio in medium VLDL 115,082 European ancestry individuals A 0.29615 5E-9 8.302 rs2642438 0.0246874 very low density lipoprotein cholesterol measurement (EFO:0008317)
cholesteryl esters:total lipids ratio (EFO:0020944)
 PMID:35213538
None Available GCST90092921 Free cholesterol to total lipids ratio in medium VLDL 115,082 European ancestry individuals A 0.29615 2E-11 10.699 rs2642438 0.028956 very low density lipoprotein cholesterol measurement (EFO:0008317)
free cholesterol:total lipids ratio (EFO:0020945)
 PMID:35213538
None Available GCST90092979 Triglycerides to total lipids ratio in small VLDL 115,082 European ancestry individuals A 0.29615 2E-11 10.699 rs2642438 0.029205 triglycerides:total lipids ratio (EFO:0020947)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS1003299_H GCST90092808 Apolipoprotein A1 levels 115,082 European ancestry individuals A 0.29615 9E-18 17.046 rs2642438 0.0355163 apolipoprotein A 1 measurement (EFO:0004614)
 PMID:35213538
GWAS1003303_H GCST90092824 Free cholesterol levels in HDL 115,082 European ancestry individuals A 0.29615 2E-20 19.699 rs2642438 0.037005 free cholesterol measurement (EFO:0008591)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
None Available GCST90092835 Free cholesterol levels in IDL 115,082 European ancestry individuals A 0.29615 2E-17 16.699 rs2642438 0.0372462 free cholesterol measurement (EFO:0008591)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
None Available GCST90092831 Cholesterol levels in IDL 115,082 European ancestry individuals A 0.29615 3E-18 17.523 rs2642438 0.0381422 total cholesterol measurement (EFO:0004574)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
None Available GCST90092839 Phospholipid levels in IDL 115,082 European ancestry individuals A 0.29615 7E-13 12.155 rs2642438 0.0312727 phospholipid measurement (EFO:0004639)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
None Available GCST90092840 Phospholipids to total lipids ratio in IDL 115,082 European ancestry individuals A 0.29615 3E-12 11.523 rs2642438 0.0316248 phospholipids:total lipids ratio (EFO:0020946)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
None Available GCST90092969 Cholesterol to total lipids ratio in small VLDL 115,082 European ancestry individuals A 0.29615 1E-10 10 rs2642438 0.0282778 very low density lipoprotein cholesterol measurement (EFO:0008317)
cholesterol:total lipids ratio (EFO:0020943)
 PMID:35213538
None Available GCST90092848 Free cholesterol levels in large HDL 115,082 European ancestry individuals A 0.29615 6E-17 16.222 rs2642438 0.0331066 free cholesterol measurement (EFO:0008591)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
None Available GCST90295949 Triglyceride to HDL cholesterol ratio 402,398 European ancestry individuals A 0.2972 1E-15 15 rs2642438 0.0274 triglyceride:HDL cholesterol ratio (EFO:0007929)
 PMID:38200128
None Available GCST90092915 Triglycerides to total lipids ratio in medium LDL 115,082 European ancestry individuals A 0.29615 9E-10 9.046 rs2642438 0.0271282 triglycerides:total lipids ratio (EFO:0020947)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90295951 Triglyceride to HDL cholesterol ratio 216,649 European ancestry individuals A 0.2964 2E-8 7.699 rs2642438 0.0223 triglyceride:HDL cholesterol ratio (EFO:0007929)
 PMID:38200128
None Available GCST90092838 Concentration of IDL particles 115,082 European ancestry individuals A 0.29615 1E-10 10 rs2642438 0.0288954 intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
None Available GCST90092929 Ratio of monounsaturated fatty acids to total fatty acids 115,006 European ancestry individuals A 0.296172 3E-13 12.523 rs2642438 0.0316508 fatty acid measurement (EFO:0005110)
 PMID:35213538
None Available GCST90092900 Phospholipid levels in medium HDL 115,082 European ancestry individuals A 0.29615 1E-15 15 rs2642438 0.0338665 phospholipid measurement (EFO:0004639)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
None Available GCST90092897 Free cholesterol to total lipids ratio in medium HDL 115,082 European ancestry individuals A 0.29615 3E-19 18.523 rs2642438 0.0359371 free cholesterol:total lipids ratio (EFO:0020945)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS1004974_H GCST90018956 HDL cholesterol 315,133 European ancestry individuals, 74,970 East Asian ancestry individuals G NR 4E-34 33.398 rs2642438 0.0281 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34594039
None Available GCST90302035 Free cholesterol in medium HDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.288 3E-16 15.523 rs2642438 0.0355 free cholesterol in medium HDL measurement (EFO:0022267)
 PMID:38448586
None Available GCST90092822 HDL cholesterol levels 115,082 European ancestry individuals A 0.29615 1E-18 18 rs2642438 0.0357106 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
None Available GCST90302038 Concentration of medium HDL particles 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.288 3E-15 14.523 rs2642438 0.0344 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:38448586
None Available GCST90302039 Phospholipids in medium HDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2881 2E-16 15.699 rs2642438 0.0359 phospholipids in medium HDL measurement (EFO:0022295)
 PMID:38448586
None Available GCST90093006 Cholesteryl ester levels in very large HDL 115,082 European ancestry individuals A 0.29615 2E-11 10.699 rs2642438 0.0272536 cholesteryl ester measurement (EFO:0010351)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
None Available GCST90302037 Total lipids in medium HDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.288 2E-15 14.699 rs2642438 0.0346 total lipids in medium HDL measurement (EFO:0022310)
 PMID:38448586
None Available GCST90302031 Total cholesterol levels in medium HDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.288 1E-14 14 rs2642438 0.0335 total cholesterol measurement (EFO:0004574)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:38448586
None Available GCST90302033 Cholesterol esters in medium HDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.288 8E-14 13.097 rs2642438 0.0325 esterified cholesterol measurement (EFO:0008589)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:38448586
GWAS1007399_H GCST90093033 Free cholesterol to total lipids ratio in very small VLDL 115,082 European ancestry individuals A 0.29615 3E-8 7.523 rs2642438 0.0248794 very low density lipoprotein cholesterol measurement (EFO:0008317)
free cholesterol:total lipids ratio (EFO:0020945)
 PMID:35213538
GWAS1007962_H GCST90092977 Phospholipids to total lipids ratio in small VLDL 115,082 European ancestry individuals A 0.29615 7E-12 11.155 rs2642438 0.0295122 very low density lipoprotein cholesterol measurement (EFO:0008317)
phospholipids:total lipids ratio (EFO:0020946)
 PMID:35213538
None Available GCST90270116 Multi-trait sex score 161,906 European ancestry females ? NR 2E-8 7.699 rs2642438 N/A sexual dimorphism measurement (EFO:0021796)
 PMID:37277458
None Available GCST90278638 Low density lipoprotein cholesterol levels 92,615 Taiwanese ancestry individuals ? NR 2E-13 12.699 rs2642438 N/A low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38116116
None Available GCST90278644 Total cholesterol levels 92,615 Taiwanese ancestry individuals ? NR 3E-16 15.523 rs2642438 N/A total cholesterol measurement (EFO:0004574)
 PMID:38116116
None Available GCST90016673 Percent liver fat 32,858 European ancestry individuals ? NR 1E-10 10 rs2642438 0.0545 liver fat measurement (EFO:0010821)
 PMID:34128465
GWAS1015224_H GCST90011738 Alanine transaminase levels in high alcohol intake 34,238 British ancestry individuals ? 0.2973 9E-13 12.046 rs2642438 0.011 serum alanine aminotransferase measurement (EFO:0004735)
 PMID:32561361
GWAS1025971_H GCST90244008 Total cholesterol levels 288,127 East Asian ancestry individuals G 0.8436 8E-19 18.097 rs2642438 0.0338 total cholesterol measurement (EFO:0004574)
 PMID:36333282
GWAS1026716_H GCST90013406 Liver enzyme levels (alkaline phosphatase) 437,438 European ancestry individuals A 0.297414 3E-41 40.523 rs2642438 0.00326564 alkaline phosphatase measurement (EFO:0004533)
 PMID:33972514
GWAS1027546_H GCST90013405 Liver enzyme levels (alanine transaminase) 437,267 European ancestry individuals A 0.297417 6E-57 56.222 rs2642438 0.00676311 serum alanine aminotransferase measurement (EFO:0004735)
 PMID:33972514
None Available GCST90244006 LDL cholesterol levels 288,127 East Asian ancestry individuals G 0.8436 9E-13 12.046 rs2642438 0.0313 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:36333282
None Available GCST90244005 HDL cholesterol levels 288,127 East Asian ancestry individuals G 0.8436 4E-14 13.398 rs2642438 0.033 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:36333282
None Available GCST90244967 1-stearoyl-2-docosapentaenoyl-GPC (18:0/22:5n3) levels 14,296 European ancestry individuals A 0.2909 2E-11 10.699 rs2642438 0.07477268 1-stearoyl-2-docosapentaenoyl-GPC (18:0/22:5n3) measurement (EFO:0800455)
 PMID:36357675
GWAS1029725_H GCST90179147 High-density lipoprotein levels (MTAG) 361,194 European ancestry individuals A NR 2E-27 26.699 rs2642438 0.03083 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:36376304
None Available GCST90267352 Liver proton density fat fraction 33,235 European ancestry individuals A 0.28 2E-14 13.699 rs2642438 7.68 liver fat measurement (EFO:0010821)
 PMID:36402844
None Available GCST90267367 Body composition (MOSTest) 33,588 European ancestry individuals ? NR 3E-14 13.523 rs2642438 7.62 body composition measurement (EFO:0005106)
 PMID:36402844
None Available GCST90027091 Sex hormone-binding globulin levels 148,248 British ancestry men G 0.7 1E-11 11 rs2642438 0.59 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:34321204
None Available GCST90134518 Total cholesterol levels 58,701 Korean ancestry individuals A NR 5E-7 6.302 rs2642438 1.41 total cholesterol measurement (EFO:0004574)
 PMID:35884923
GWAS1036378_H GCST90134520 LDL cholesterol levels 58,701 Korean ancestry individuals A NR 0.000008 5.097 rs2642438 1.14 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35884923
None Available GCST90134519 HDL cholesterol levels 58,701 Korean ancestry individuals A NR 6E-7 6.222 rs2642438 0.5 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35884923
GWAS1039580_H GCST90239670 Non-HDL cholesterol levels 1,320,016 European ancestry individuals A 0.294573 1E-23 23 rs2642438 0.0211647 non-high density lipoprotein cholesterol measurement (EFO:0005689)
 PMID:34887591
None Available GCST90239669 Non-HDL cholesterol levels 146,492 East Asian ancestry individuals G 0.823205 2E-8 7.699 rs2642438 0.0350331 non-high density lipoprotein cholesterol measurement (EFO:0005689)
 PMID:34887591
GWAS1040350_H GCST90018943 Alanine aminotransferase levels 344,136 European ancestry individuals, 150,545 East Asian ancestry individuals G NR 1E-34 34 rs2642438 0.0262 serum alanine aminotransferase measurement (EFO:0004735)
 PMID:34594039
None Available GCST90018942 Serum alkaline phosphatase levels 344,292 European ancestry individuals, 118,886 East Asian ancestry individuals G NR 4E-34 33.398 rs2642438 0.0276 alkaline phosphatase measurement (EFO:0004533)
 PMID:34594039
GWAS1040810_H GCST90239676 Total cholesterol levels 1,320,016 European ancestry individuals G 0.705671 3E-57 56.523 rs2642438 0.0281144 total cholesterol measurement (EFO:0004574)
 PMID:34887591
GWAS1040872_H GCST90428729 Alanine aminotransferase levels 1,010,710 European ancestry individuals A NR 3E-62 61.523 rs2642438 0.007 serum alanine aminotransferase measurement (EFO:0004735)
 PMID:38632349
GWAS1041035_H GCST90239649 High density lipoprotein cholesterol levels 40,963 South Asian ancestry individuals, 48,057 Hispanic individuals, 99,432 Admixed African or African ancestry individuals, 146,492 East Asian ancestry individuals, 1,320,016 European ancestry individuals ? NR 9E-77 76.046 rs2642438 N/A high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34887591
GWAS1041727_H GCST90239667 Non-HDL cholesterol levels 40,963 South Asian ancestry individuals, 48,057 Hispanic individuals, 99,432 Admixed African or African ancestry individuals, 146,492 East Asian ancestry individuals, 1,320,016 European ancestry individuals ? NR 4E-35 34.398 rs2642438 N/A non-high density lipoprotein cholesterol measurement (EFO:0005689)
 PMID:34887591
None Available GCST90018754 Total cholesterol levels 135,808 East Asian ancestry individuals G 0.818067 2E-9 8.699 rs2642438 0.0280596 total cholesterol measurement (EFO:0004574)
 PMID:34594039
None Available GCST90239675 Total cholesterol levels 146,492 East Asian ancestry individuals G 0.824381 2E-16 15.699 rs2642438 0.0442531 total cholesterol measurement (EFO:0004574)
 PMID:34887591
GWAS1044703_H GCST90239661 Triglyceride levels 40,963 South Asian ancestry individuals, 48,057 Hispanic individuals, 99,432 Admixed African or African ancestry individuals, 146,492 East Asian ancestry individuals, 1,320,016 European ancestry individuals ? NR 5E-25 24.302 rs2642438 N/A triglyceride measurement (EFO:0004530)
 PMID:34887591
None Available GCST90018961 LDL cholesterol 343,621 European ancestry individuals, 72,866 East Asian ancestry individuals G NR 2E-25 24.699 rs2642438 0.0248 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34594039
GWAS1045639_H GCST90018974 Total cholesterol levels 344,278 European ancestry individuals, 135,808 East Asian ancestry individuals G NR 6E-37 36.222 rs2642438 0.0282 total cholesterol measurement (EFO:0004574)
 PMID:34594039
None Available GCST90239651 High density lipoprotein cholesterol levels 146,492 East Asian ancestry individuals G 0.822957 7E-10 9.155 rs2642438 0.0367136 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34887591
GWAS1047948_H GCST90239673 Total cholesterol levels 40,963 South Asian ancestry individuals, 48,057 Hispanic individuals, 99,432 Admixed African or African ancestry individuals, 146,492 East Asian ancestry individuals, 1,320,016 European ancestry individuals ? NR 2E-92 91.699 rs2642438 N/A total cholesterol measurement (EFO:0004574)
 PMID:34887591
GWAS1048057_H GCST90239652 High density lipoprotein cholesterol levels 1,320,016 European ancestry individuals G 0.705615 1E-42 42 rs2642438 0.0271768 high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34887591
None Available GCST90239657 Low density lipoprotein cholesterol levels 146,492 East Asian ancestry individuals G 0.822569 9E-13 12.046 rs2642438 0.0509314 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34887591
GWAS1048367_H GCST90239658 Low density lipoprotein cholesterol levels 1,320,016 European ancestry individuals G 0.70565 2E-52 51.699 rs2642438 0.0268921 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:34887591
Database Acc Id Source(s)
GWAS Catalog GCST90134520 GWAS Catalog

RGD Curation Notes
Note Type Note Reference