GWAS1020154_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1020154_H (neuroimaging measurement QTL GWAS1020154 (human)) Homo sapiens

Symbol: GWAS1020154_H
Name: neuroimaging measurement QTL GWAS1020154 (human)
RGD ID: 407371178
Trait: neuroimaging measurement
LOD Score: Not Available
P Value: 2.0E-70
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381539,340,068 - 39,340,069RGD_MAPPER_PIPELINEGRCh38
GRCh371539,632,269 - 39,632,270RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1020154_HHumanneuroimaging measurement  IAGPrs7182018405850206 GWAS_CATALOGPMID:30649180
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
38627269LOC105370777uncharacterized LOC105370777153886480639421060Human

Position Markers

Peak: (rs7182018)
Human AssemblyChrPosition (strand)Source
GRCh381539,340,068 - 39,340,069RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
406935072GWAS584048_Hneuroimaging measurement QTL GWAS584048 (human)1e-09neuroimaging measurement153934006839340069Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
406908809GWAS557785_Hneuroimaging measurement QTL GWAS557785 (human)1e-11neuroimaging measurement153934006839340069Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
407371178GWAS1020154_Hneuroimaging measurement QTL GWAS1020154 (human)2e-70neuroimaging measurement153934006839340069Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human
407371177GWAS1020153_Hneuroimaging measurement QTL GWAS1020153 (human)4e-60neuroimaging measurement153934006839340069Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
406910481GWAS559457_Hneuroimaging measurement QTL GWAS559457 (human)1e-18brain volume measurementbrain morphological measurement (CMO:0000136)153934006839340069Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
406924318GWAS573294_Hneuroimaging measurement QTL GWAS573294 (human)7e-11neuroimaging measurement153934006839340069Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS557785_H GCST90384991 T1 FreeSurfer a2009s rh G postcentral thickness 7,058 Chinese Han ancestry individuals G NR 1E-11 11 rs7182018 0.243661 neuroimaging measurement (EFO:0004346)
 PMID:38811844
GWAS559457_H GCST90385578 T1 FreeSurfer BA rh BA3b exvivo volume 7,058 Chinese Han ancestry individuals G NR 1E-18 18 rs7182018 0.28722 neuroimaging measurement (EFO:0004346)
 PMID:38811844
GWAS573294_H GCST90385744 T1 FreeSurfer DK rh postcentral thickness 7,058 Chinese Han ancestry individuals G NR 7E-11 10.155 rs7182018 0.23663 neuroimaging measurement (EFO:0004346)
 PMID:38811844
GWAS584048_H GCST90384337 T1 FreeSurfer DKT rh postcentral thickness 7,058 Chinese Han ancestry individuals G NR 1E-9 9 rs7182018 0.220423 neuroimaging measurement (EFO:0004346)
 PMID:38811844
GWAS1020153_H GCST007357 Voxel-wise structural brain imaging measurements 1,721 European ancestry adolescent individuals ? NR 4E-60 59.398 rs7182018 N/A neuroimaging measurement (EFO:0004346)
 PMID:30649180
GWAS1020154_H GCST007357 Voxel-wise structural brain imaging measurements 1,721 European ancestry adolescent individuals ? NR 2E-70 69.699 rs7182018 N/A neuroimaging measurement (EFO:0004346)
 PMID:30649180
None Available GCST90399892 Regional cortical thickness (parsopercularis) 34,538 European ancestry individuals A NR 3E-8 7.523 rs7182018 N/A cortical thickness (EFO:0004840)
 PMID:38890310
None Available GCST90002820 aparc-Desikan rh volume parstriangularis 21,282 British ancestry individuals G 0.089 1E-18 18 rs7182018 0.15 brain volume measurement (EFO:0006930)
 PMID:33875891
Database Acc Id Source(s)
GWAS Catalog GCST007357 GWAS Catalog

RGD Curation Notes
Note Type Note Reference