GWAS1018694_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1018694_H (acute myeloid leukemia QTL GWAS1018694 (human)) Homo sapiens

Symbol: GWAS1018694_H
Name: acute myeloid leukemia QTL GWAS1018694 (human)
RGD ID: 407369718
Trait: acute myeloid leukemia
LOD Score: Not Available
P Value: 1.0E-15
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381549,832,202 - 49,832,203RGD_MAPPER_PIPELINEGRCh38
GRCh371550,124,399 - 50,124,400RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs7182178)
Human AssemblyChrPosition (strand)Source
GRCh381549,832,202 - 49,832,203RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
407369718GWAS1018694_Hacute myeloid leukemia QTL GWAS1018694 (human)1e-15acute myeloid leukemia154983220249832203Human
407369652GWAS1018628_Hacute myeloid leukemia QTL GWAS1018628 (human)8e-29acute myeloid leukemia154983220249832203Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1018628_H GCST008413 Core binding factor acute myeloid leukemia 175 European ancestry cases, 218 European ancestry controls C 0.0 8E-29 28.097 rs7182178 N/A acute myeloid leukemia (EFO:0000222)
 PMID:27903959
GWAS1018694_H GCST008413 Core binding factor acute myeloid leukemia 175 European ancestry cases, 218 European ancestry controls T 0.312 1E-15 15 rs7182178 N/A acute myeloid leukemia (EFO:0000222)
 PMID:27903959
Database Acc Id Source(s)
GWAS Catalog GCST008413 GWAS Catalog

RGD Curation Notes
Note Type Note Reference