GWAS1018654_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1018654_H (celiac disease QTL GWAS1018654 (human)) Homo sapiens

Symbol: GWAS1018654_H
Name: celiac disease QTL GWAS1018654 (human)
RGD ID: 407369678
Trait: celiac disease
LOD Score: Not Available
P Value: 2.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386159,093,828 - 159,093,829RGD_MAPPER_PIPELINEGRCh38
GRCh376159,514,860 - 159,514,861RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
celiac disease  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Celiac disease  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
38636990LOC112267968uncharacterized LOC1122679686159061878159121506Human

Position Markers

Peak: (rs3120630)
Human AssemblyChrPosition (strand)Source
GRCh386159,093,828 - 159,093,829RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
407369678GWAS1018654_Hceliac disease QTL GWAS1018654 (human)2e-08celiac disease6159093828159093829Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1018654_H GCST008489 Celiac disease 425 Irish ancestry cases, 453 Irish ancestry controls ? NR 2E-8 7.699 rs3120630 0.1411 celiac disease (EFO:0001060)
 PMID:25920553
Database Acc Id Source(s)
GWAS Catalog GCST008489 GWAS Catalog

RGD Curation Notes
Note Type Note Reference