LOC112267968 (uncharacterized LOC112267968) - Rat Genome Database

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Gene: LOC112267968 (uncharacterized LOC112267968) Homo sapiens
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Symbol: LOC112267968
Name: uncharacterized LOC112267968
RGD ID: 38636990
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized protein LOC112267968
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386159,061,878 - 159,121,506 (-)NCBIGRCh38GRCh38hg38GRCh38
Cytogenetic Map6q25.3NCBI
T2T-CHM13v2.06160,307,481 - 160,367,078 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC112267968
9 total Variants

QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407167683GWAS816659_Hrheumatoid arthritis QTL GWAS816659 (human)7e-13rheumatoid arthritis6159068759159068760Human
407132621GWAS781597_Hinflammatory bowel disease QTL GWAS781597 (human)0.0000002inflammatory bowel disease6159069404159069405Human
407173261GWAS822237_Hatopic eczema QTL GWAS822237 (human)5e-61atopic eczema6159075681159075682Human
407369678GWAS1018654_Hceliac disease QTL GWAS1018654 (human)2e-08celiac disease6159093828159093829Human
406914380GWAS563356_Hbreast density QTL GWAS563356 (human)0.000001breast density6159078784159078785Human
407141781GWAS790757_Hrheumatoid arthritis QTL GWAS790757 (human)9e-09rheumatoid arthritis6159068759159068760Human
407396889GWAS1045865_Hcardiac troponin T measurement QTL GWAS1045865 (human)0.000001cardiac troponin T measurementblood troponin T level (CMO:0001284)6159099266159099267Human
407388316GWAS1037292_Hmyeloid white cell count QTL GWAS1037292 (human)8e-12myeloid white cell countwhite blood cell count (CMO:0000027)6159094045159094046Human
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
407134097GWAS783073_Hrheumatoid arthritis QTL GWAS783073 (human)6e-10rheumatoid arthritis6159085568159085569Human
407141778GWAS790754_Hrheumatoid arthritis QTL GWAS790754 (human)0.000001rheumatoid arthritis6159075681159075682Human
407419039GWAS1068015_Hpsoriasis vulgaris QTL GWAS1068015 (human)1e-11psoriasis vulgaris6159094277159094278Human
407319007GWAS967983_Hrheumatoid arthritis QTL GWAS967983 (human)3e-12rheumatoid arthritis6159082054159082055Human
407230108GWAS879084_Hrheumatoid arthritis, anti-citrullinated protein antibody seropositivity, rheumatoid factor seropositivity measurement QTL GWAS879084 (human)1e-13rheumatoid arthritis6159082054159082055Human
407374289GWAS1023265_Hnicotine dependence symptom count, depressive symptom measurement QTL GWAS1023265 (human)0.000009nicotine dependence symptom count, depressive symptom measurement6159106779159106780Human
407177503GWAS826479_Hrheumatoid arthritis QTL GWAS826479 (human)6e-11rheumatoid arthritis6159085568159085569Human
407136730GWAS785706_HIGA glomerulonephritis QTL GWAS785706 (human)0.000008IGA glomerulonephritis6159078716159078717Human
407138330GWAS787306_Hceliac disease QTL GWAS787306 (human)0.000003celiac disease6159077235159077236Human
407232935GWAS881911_Hrheumatoid arthritis QTL GWAS881911 (human)1e-10rheumatoid arthritis6159068759159068760Human
407006177GWAS655153_HCrohn's disease QTL GWAS655153 (human)1e-10Crohn's disease6159069404159069405Human
407146144GWAS795120_HCrohn's disease QTL GWAS795120 (human)3e-14Crohn's disease6159069404159069405Human
407194784GWAS843760_Himmature granulocyte measurement QTL GWAS843760 (human)4e-48immature granulocyte measurement6159082330159082331Human
407389614GWAS1038590_Hneutrophil count, basophil count QTL GWAS1038590 (human)4e-12basophil quantity (VT:0002607)blood basophil count (CMO:0000034)6159094045159094046Human
407130796GWAS779772_Hankylosing spondylitis, psoriasis, ulcerative colitis, Crohn's disease, sclerosing cholangitis QTL GWAS779772 (human)5e-17ankylosing spondylitis, psoriasis, ulcerative colitis, Crohn's disease, sclerosing cholangitis6159085568159085569Human
407319087GWAS968063_Hrheumatoid arthritis, ACPA-positive rheumatoid arthritis, rheumatoid factor seropositivity measurement QTL GWAS968063 (human)2e-12rheumatoid arthritis, ACPA-positive rheumatoid arthritis, rheumatoid factor seropositivity measurement6159085568159085569Human
407146280GWAS795256_Hrheumatoid arthritis QTL GWAS795256 (human)3e-11rheumatoid arthritis6159085568159085569Human
407146281GWAS795257_Hrheumatoid arthritis QTL GWAS795257 (human)2e-10rheumatoid arthritis6159085568159085569Human
407129195GWAS778171_HCrohn's disease QTL GWAS778171 (human)2e-11Crohn's disease6159069404159069405Human
407347831GWAS996807_Hmultiple sclerosis QTL GWAS996807 (human)0.0000006multiple sclerosis6159103590159103591Human
407124085GWAS773061_Hceliac disease, Crohn's disease QTL GWAS773061 (human)2e-10celiac disease, Crohn's disease6159069404159069405Human
407225014GWAS873990_Hpsoriasis QTL GWAS873990 (human)3e-08psoriasis6159085568159085569Human
407201009GWAS849985_Hrheumatoid arthritis, Crohn's disease QTL GWAS849985 (human)6e-11rheumatoid arthritis, Crohn's disease6159068759159068760Human
407320497GWAS969473_Hrheumatoid arthritis, anti-citrullinated protein antibody seropositivity, rheumatoid factor seropositivity measurement QTL GWAS969473 (human)6e-15rheumatoid arthritis, anti-citrullinated protein antibody seropositivity, rheumatoid factor seropositivity measurement6159082054159082055Human
407388927GWAS1037903_Hneutrophil count QTL GWAS1037903 (human)2e-12neutrophil quantity (VT:0000222)blood neutrophil count (CMO:0000030)6159094045159094046Human
407131581GWAS780557_HCrohn's disease QTL GWAS780557 (human)2e-16Crohn's disease6159069404159069405Human
407191551GWAS840527_Himmature granulocyte count QTL GWAS840527 (human)4e-38immature granulocyte count6159082330159082331Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_047419645   ⟹   XP_047275601
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386159,061,878 - 159,121,506 (-)NCBI
RefSeq Acc Id: XM_047444781   ⟹   XP_047300737
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.06160,307,481 - 160,367,078 (-)NCBI
Protein Sequences
Protein RefSeqs XP_047275601 (Get FASTA)   NCBI Sequence Viewer  
  XP_047300737 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_047275601   ⟸   XM_047419645
RefSeq Acc Id: XP_047300737   ⟸   XM_047444781


Additional Information

Database Acc Id Source(s)
COSMIC LOC112267968 COSMIC
GTEx LOC112267968 GTEx
Human Proteome Map LOC112267968 Human Proteome Map
NCBI Gene LOC112267968 ENTREZGENE