GWAS1018644_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1018644_H (gut microbiome measurement QTL GWAS1018644 (human)) Homo sapiens

Symbol: GWAS1018644_H
Name: gut microbiome measurement QTL GWAS1018644 (human)
RGD ID: 407369668
Trait: gut microbiome measurement
LOD Score: Not Available
P Value: 2.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3814,336,479 - 4,336,480RGD_MAPPER_PIPELINEGRCh38
GRCh3714,396,539 - 4,396,540RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1018644_HHumangut microbiome measurement  IAGPrs199545687405850206 GWAS_CATALOGPMID:27694959
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs199545687)
Human AssemblyChrPosition (strand)Source
GRCh3814,336,479 - 4,336,480RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298451OSTEAR17_HOsteoarthritis QTL 17 (human)2.40.0004Joint/bone inflammationosteoarthritis11125188105Human
407369668GWAS1018644_Hgut microbiome measurement QTL GWAS1018644 (human)2e-08gut microbiome measurement143364794336480Human
1298463BP9_HBlood pressure QTL 9 (human)3.9Blood pressurehypertension susceptibility1125188105Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1018644_H GCST003854 Gut microbiota (functional units) 984 European ancestry individuals C NR 2E-8 7.699 rs199545687 5.596856 gut microbiome measurement (EFO:0007874)
 PMID:27694959
Database Acc Id Source(s)
GWAS Catalog GCST003854 GWAS Catalog

RGD Curation Notes
Note Type Note Reference