GWAS1017813_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1017813_H (schizophrenia QTL GWAS1017813 (human)) Homo sapiens

Symbol: GWAS1017813_H
Name: schizophrenia QTL GWAS1017813 (human)
RGD ID: 407368837
Trait: schizophrenia
LOD Score: Not Available
P Value: 4.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381552,594,765 - 52,594,766RGD_MAPPER_PIPELINEGRCh38
GRCh371552,886,962 - 52,886,963RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS1017813_HHumanschizophrenia  IAGPrs4776059405850206 GWAS_CATALOGPMID:26198764
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1606264ATOSAatos homolog A155258132152709815Human

Position Markers

Peak: (rs4776059)
Human AssemblyChrPosition (strand)Source
GRCh381552,594,765 - 52,594,766RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
407368837GWAS1017813_Hschizophrenia QTL GWAS1017813 (human)0.000004schizophrenia155259476552594766Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1017813_H GCST003048 Schizophrenia 592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls T NR 0.000004 5.398 rs4776059 1.06 PMID:26198764
Database Acc Id Source(s)
GWAS Catalog GCST003048 GWAS Catalog

RGD Curation Notes
Note Type Note Reference